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Chromosome
1
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8
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MT
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External id
Variability
Variable
Not variable
Tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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390 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
FAM78A
ENSSSCG00000028172
ENSG00000126882
Family with sequence similarity 78 member A
Tissue enhanced
Detected in many
lymphoid tissue:
47.0
skeletal muscle:
22.1
testis:
37.9
FCER2
ENSSSCG00000040377
ENSG00000104921
Low affinity immunoglobulin epsilon Fc receptor
Tissue enriched
Detected in some
lymphoid tissue:
47.0
FCGBP
ENSSSCG00000027515
ENSG00000275395
Fc fragment of IgG binding protein
Tissue enriched
Detected in some
male glands:
762.8
FCMR
ENSSSCG00000015656
ENSG00000162894
Fc fragment of IgM receptor
Tissue enhanced
Detected in many
lymphoid tissue:
71.2
stomach:
19.5
FCN2
ENSSSCG00000023333
Ficolin-2 precursor
Tissue enhanced
Detected in many
adipose tissue:
64.7
large intestine:
57.6
small intestine:
75.4
stomach:
99.9
vagus nerve:
43.5
FFAR4
ENSSSCG00000010478
ENSG00000186188
Cone cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha'
Tissue enhanced
Detected in many
adipose tissue:
16.2
upper respiratory system:
28.1
FGD3
ENSSSCG00000028185
ENSG00000127084
FYVE, RhoGEF and PH domain containing 3
Tissue enhanced
Detected in many
lymphoid tissue:
40.5
small intestine:
21.3
stomach:
32.6
FIBIN
ENSSSCG00000022592
ENSG00000176971
Fin bud initiation factor homolog (zebrafish)
Tissue enhanced
Detected in many
cartilage:
83.3
dura mater:
39.3
FRZB
ENSSSCG00000016018
ENSG00000162998
Secreted frizzled-related protein 3 precursor
Tissue enhanced
Detected in many
heart:
72.7
pineal gland:
62.3
GALNT5
ENSSSCG00000026146
ENSG00000136542
Polypeptide N-acetylgalactosaminyltransferase 5
Tissue enhanced
Detected in many
esophagus:
19.6
salivary gland:
22.7
GAST
ENSSSCG00000021910
ENSG00000184502
Gastrin precursor
Tissue enriched
Detected in single
stomach:
127.6
GATA3
ENSSSCG00000011125
ENSG00000107485
Trans-acting T-cell-specific transcription factor GATA-3
Tissue enhanced
Detected in many
kidney:
50.6
male glands:
129.9
skin:
97.0
urinary bladder:
53.3
GATA4
ENSSSCG00000022383
ENSG00000136574
Transcription factor GATA-4
Tissue enhanced
Detected in some
heart:
36.1
small intestine:
21.6
stomach:
67.0
GATA5
ENSSSCG00000007538
ENSG00000130700
GATA binding protein 5
Tissue enhanced
Detected in many
adipose tissue:
32.2
mesothelial tissue:
60.4
small intestine:
29.7
stomach:
45.3
GBP2
ENSSSCG00000006923
ENSG00000162645
Interferon-induced guanylate-binding protein 2
Tissue enhanced
Detected in all
small intestine:
38.8
stomach:
38.0
GFRA3
ENSSSCG00000014328
ENSG00000146013
GDNF family receptor alpha 3
Tissue enhanced
Detected in many
adipose tissue:
31.5
brain:
27.3
small intestine:
32.3
vagus nerve:
24.9
GJB1
ENSSSCG00000012394
ENSG00000169562
Gap junction protein beta 1
Tissue enhanced
Detected in many
epididymis:
101.6
liver:
97.0
male glands:
100.9
GKAP1
ENSSSCG00000026087
ENSG00000165113
G kinase anchoring protein 1
Tissue enhanced
Detected in all
testis:
49.4
GKN1
ENSSSCG00000035529
ENSG00000169605
Gastrokine-1
Tissue enriched
Detected in single
stomach:
603.0
GKN2
ENSSSCG00000038802
ENSG00000183607
Gastrokine-2 precursor
Tissue enriched
Detected in single
stomach:
380.5
GKN3
ENSSSCG00000037028
Gastrokine-3 precursor
Tissue enriched
Detected in some
small intestine:
705.8
GPR15
ENSSSCG00000011979
ENSG00000154165
G protein-coupled receptor 15
Tissue enhanced
Detected in some
large intestine:
24.6
liver:
12.5
lymphoid tissue:
9.7
stomach:
9.6
GPR88
ENSSSCG00000035602
ENSG00000181656
G protein-coupled receptor 88
Tissue enriched
Detected in some
brain:
89.0
GPRL15
ENSSSCG00000024634
ENSG00000188373
Protein GPR15L
Tissue enhanced
Detected in some
large intestine:
118.4
lymphoid tissue:
26.5
salivary gland:
27.7
upper respiratory system:
37.9
GPSM3
ENSSSCG00000001439
ENSG00000213654
G-protein-signaling modulator 3
Tissue enhanced
Detected in many
lymphoid tissue:
77.1
GPX3
ENSSSCG00000036438
ENSG00000211445
Glutathione peroxidase 3 precursor
Group enriched
Detected in many
kidney:
521.1
ovary:
496.9
GREM1
ENSSSCG00000033657
ENSG00000166923
Gremlin 1, DAN family BMP antagonist
Tissue enhanced
Detected in many
cartilage:
38.7
gallbladder:
38.9
kidney:
37.6
small intestine:
50.0
smooth muscle:
39.8
GRIA3
ENSSSCG00000012638
ENSG00000125675
Glutamate ionotropic receptor AMPA type subunit 3
Tissue enhanced
Detected in many
adrenal gland:
19.6
brain:
27.5
ovary:
13.7
pineal gland:
18.6
GULP1
ENSSSCG00000016033
ENSG00000144366
GULP, engulfment adaptor PTB domain containing 1
Tissue enhanced
Detected in many
choroid plexus:
95.7
HAP1
ENSSSCG00000017427
ENSG00000173805
Huntingtin associated protein 1
Tissue enhanced
Detected in some
brain:
30.5
cervix:
8.9
pineal gland:
12.2
pituitary gland:
9.5
HEPACAM2
ENSSSCG00000025870
ENSG00000188175
HEPACAM family member 2
Tissue enhanced
Detected in all
large intestine:
36.4
pituitary gland:
41.9
HMX3
ENSSSCG00000010724
ENSG00000188620
H6 family homeobox 3
Group enriched
Detected in some
brain:
12.1
large intestine:
3.7
small intestine:
4.2
stomach:
12.2
HOXA5
ENSSSCG00000016703
ENSG00000106004
Homeobox protein Hox-A5
Tissue enhanced
Detected in many
epididymis:
34.4
male glands:
42.7
HOXB6
ENSSSCG00000017539
ENSG00000108511
Homeobox B6
Group enriched
Detected in many
epididymis:
55.3
male glands:
186.0
HS3ST1
ENSSSCG00000021515
ENSG00000002587
Heparan sulfate-glucosamine 3-sulfotransferase 1
Tissue enhanced
Detected in many
cartilage:
54.1
epididymis:
32.4
HSPB7
ENSSSCG00000037457
ENSG00000173641
Heat shock protein beta-7
Group enriched
Detected in many
heart:
170.0
skeletal muscle:
72.9
HSPB8
ENSSSCG00000009844
ENSG00000152137
Heat shock protein family B (small) member 8
Tissue enhanced
Detected in many
skeletal muscle:
123.2
ICAM2
ENSSSCG00000039909
ENSG00000108622
Intercellular adhesion molecule 2 precursor
Low tissue specificity
Detected in many
ICOS
ENSSSCG00000025042
ENSG00000163600
Tissue enhanced
Detected in some
large intestine:
7.4
lymphoid tissue:
24.6
stomach:
7.7
upper respiratory system:
7.3
IKZF1
ENSSSCG00000038345
ENSG00000185811
IKAROS family zinc finger 1
Tissue enhanced
Detected in many
lymphoid tissue:
58.1
stomach:
28.1
IKZF3
ENSSSCG00000017494
ENSG00000161405
IKAROS family zinc finger 3
Tissue enhanced
Detected in many
lung:
19.1
lymphoid tissue:
49.4
small intestine:
20.5
stomach:
22.2
upper respiratory system:
27.0
IL17C
ENSSSCG00000040406
ENSG00000124391
Interleukin 17C
Group enriched
Detected in many
stomach:
30.5
upper respiratory system:
11.9
IL21R
ENSSSCG00000007816
ENSG00000103522
Interleukin 21 receptor
Tissue enhanced
Detected in many
lymphoid tissue:
30.9
IL6R
ENSSSCG00000027628
ENSG00000160712
Interleukin-6 receptor subunit alpha precursor
Tissue enhanced
Detected in many
liver:
62.2
ILDR2
ENSSSCG00000035124
ENSG00000143195
Immunoglobulin like domain containing receptor 2
Tissue enhanced
Detected in many
liver:
19.0
INMT
ENSSSCG00000016676
Indolethylamine N-methyltransferase
Tissue enriched
Detected in many
liver:
77.9
INSM1
ENSSSCG00000007106
ENSG00000173404
INSM transcriptional repressor 1
Group enriched
Detected in some
adrenal gland:
40.6
pituitary gland:
37.6
IRF4
ENSSSCG00000033381
ENSG00000137265
Interferon regulatory factor 4
Tissue enhanced
Detected in many
lymphoid tissue:
22.8
stomach:
31.3
upper respiratory system:
34.8
IRX1
ENSSSCG00000034884
ENSG00000170549
Iroquois homeobox 1
Tissue enhanced
Detected in many
breast:
42.9
esophagus:
28.4
salivary gland:
50.8
skin:
34.9
IRX3
ENSSSCG00000002831
ENSG00000177508
Iroquois homeobox 3
Tissue enhanced
Detected in many
breast:
24.6
male glands:
63.3
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