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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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390 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CDH17
ENSSSCG00000006106
ENSG00000079112
Cadherin 17
Group enriched
Detected in all
large intestine:
70.1
small intestine:
27.3
stomach:
18.6
CGREF1
ENSSSCG00000008555
ENSG00000138028
Cell growth regulator with EF-hand domain 1
Tissue enhanced
Detected in many
esophagus:
36.8
male glands:
137.1
salivary gland:
40.7
CHGA
ENSSSCG00000002456
ENSG00000100604
Chromogranin-A precursor
Tissue enriched
Detected in some
adrenal gland:
301.0
CHGB
ENSSSCG00000039779
ENSG00000089199
Secretogranin-1 precursor
Group enriched
Detected in some
adrenal gland:
150.2
pituitary gland:
276.8
CHL1
ENSSSCG00000011524
ENSG00000134121
Cell adhesion molecule L1 like
Tissue enhanced
Detected in many
brain:
47.4
pineal gland:
36.4
vagus nerve:
36.8
CHST4
ENSSSCG00000002737
ENSG00000140835
Carbohydrate sulfotransferase 4
Tissue enhanced
Detected in all
large intestine:
44.1
stomach:
74.2
CILP
ENSSSCG00000004928
ENSG00000138615
Cartilage intermediate layer protein
Tissue enriched
Detected in some
cartilage:
332.4
CLCA1
ENSSSCG00000006933
ENSG00000016490
Chloride channel accessory 1
Tissue enhanced
Detected in some
esophagus:
245.3
male glands:
91.9
upper respiratory system:
255.5
CLCN2
ENSSSCG00000021581
ENSG00000114859
Chloride voltage-gated channel 2
Tissue enhanced
Detected in many
large intestine:
24.6
vagus nerve:
28.5
CLDN23
ENSSSCG00000006966
ENSG00000253958
Claudin-23
Tissue enhanced
Detected in many
male glands:
33.3
CLDN4
ENSSSCG00000007718
ENSG00000189143
Claudin-4
Tissue enhanced
Detected in many
upper respiratory system:
62.5
CMTM8
ENSSSCG00000022618
ENSG00000170293
CKLF like MARVEL transmembrane domain containing 8
Tissue enhanced
Detected in many
male glands:
57.0
CNN1
ENSSSCG00000013614
ENSG00000130176
Calponin-1
Tissue enhanced
Detected in many
smooth muscle:
549.0
urinary bladder:
230.6
COL17A1
ENSSSCG00000010607
ENSG00000065618
Collagen type XVII alpha 1 chain
Tissue enhanced
Detected in many
cornea:
150.8
skin:
41.1
COL22A1
ENSSSCG00000005938
ENSG00000169436
Collagen type XXII alpha 1 chain
Tissue enhanced
Detected in many
testis:
12.5
vagus nerve:
33.5
COX16
ENSSSCG00000002316
ENSG00000133983
COX16, cytochrome c oxidase assembly homolog
Tissue enhanced
Detected in all
lens:
34.1
CPD
ENSSSCG00000017799
ENSG00000108582
Carboxypeptidase D
Tissue enhanced
Detected in all
male glands:
86.0
CPLX2
ENSSSCG00000033682
ENSG00000145920
Complexin 2
Tissue enriched
Detected in some
brain:
95.7
CSF3R
ENSSSCG00000025795
ENSG00000119535
Colony stimulating factor 3 receptor
Tissue enhanced
Detected in many
dura mater:
20.7
lung:
17.6
lymphoid tissue:
21.1
CXCL9
ENSSSCG00000032777
ENSG00000138755
C-X-C motif chemokine 9 precursor
Tissue enhanced
Detected in many
large intestine:
26.7
liver:
29.3
lymphoid tissue:
41.0
CXCR5
ENSSSCG00000015098
ENSG00000160683
C-X-C motif chemokine receptor 5
Tissue enhanced
Detected in many
lymphoid tissue:
36.0
CYP2B22
ENSSSCG00000003006
ENSG00000197408
Cytochrome P450 2B22 precursor
Tissue enhanced
Detected in many
esophagus:
30.3
lung:
33.2
upper respiratory system:
92.8
CYP4B1
ENSSSCG00000003894
ENSG00000142973
Cytochrome P450 family 4 subfamily B member 1
Tissue enhanced
Detected in many
adipose tissue:
47.5
lung:
64.9
salivary gland:
50.4
upper respiratory system:
47.5
DAO
ENSSSCG00000009942
ENSG00000110887
D-amino-acid oxidase
Tissue enhanced
Detected in some
brain:
18.4
kidney:
92.3
liver:
26.6
small intestine:
16.5
DDC
ENSSSCG00000022009
ENSG00000132437
Dopa decarboxylase
Group enriched
Detected in some
brain:
23.8
kidney:
83.0
pineal gland:
80.8
DEFB1
ENSSSCG00000029990
ENSG00000164825
Beta-defensin 1 precursor
Group enriched
Detected in many
kidney:
122.3
large intestine:
44.2
male glands:
106.3
DENND1C
ENSSSCG00000013546
ENSG00000205744
DENN domain containing 1C
Tissue enhanced
Detected in many
lymphoid tissue:
43.0
stomach:
51.9
DES
ENSSSCG00000020785
ENSG00000175084
Desmin
Tissue enhanced
Detected in many
skeletal muscle:
301.6
smooth muscle:
547.0
urinary bladder:
220.0
DIRAS3
ENSSSCG00000003797
ENSG00000162595
GTP-binding protein Di-Ras3
Group enriched
Detected in some
brain:
96.0
pineal gland:
220.4
pituitary gland:
68.6
DMBT1
ENSSSCG00000002981
ENSG00000187908
Deleted in malignant brain tumors 1 protein precursor
Tissue enriched
Detected in some
upper respiratory system:
534.4
DNAH11
ENSSSCG00000015379
ENSG00000105877
Dynein axonemal heavy chain 11
Tissue enhanced
Detected in many
choroid plexus:
16.0
fallopian tube:
31.5
lung:
27.2
upper respiratory system:
22.7
DOCK2
ENSSSCG00000017008
ENSG00000134516
Dedicator of cytokinesis 2
Tissue enhanced
Detected in many
lymphoid tissue:
51.5
stomach:
28.8
DUOX2
ENSSSCG00000004678
ENSG00000140279
Dual oxidase 2 precursor
Group enriched
Detected in many
gallbladder:
21.4
large intestine:
37.0
stomach:
52.0
thyroid gland:
72.5
upper respiratory system:
24.4
DUOXA1
ENSSSCG00000004677
ENSG00000140254
Dual oxidase maturation factor 1
Tissue enhanced
Detected in many
mouth:
24.3
stomach:
29.6
thyroid gland:
46.7
DUOXA2
ENSSSCG00000004676
ENSG00000140274
Dual oxidase maturation factor 2
Tissue enhanced
Detected in many
large intestine:
30.1
stomach:
34.1
thyroid gland:
45.4
upper respiratory system:
28.0
ECM1
ENSSSCG00000029230
ENSG00000143369
Extracellular matrix protein 1
Tissue enhanced
Detected in many
mouth:
84.5
synovial tissue:
66.5
EDN2
ENSSSCG00000037856
ENSG00000127129
Endothelin 2
Tissue enhanced
Detected in some
mouth:
9.2
ovary:
22.8
stomach:
14.4
upper respiratory system:
15.7
EGR2
ENSSSCG00000010224
ENSG00000122877
E3 SUMO-protein ligase EGR2
Tissue enhanced
Detected in many
epididymis:
35.7
synovial tissue:
43.8
vagus nerve:
64.5
EGR3
ENSSSCG00000009630
ENSG00000179388
Early growth response 3
Tissue enhanced
Detected in many
synovial tissue:
55.2
ENPP2
ENSSSCG00000006001
ENSG00000136960
Ectonucleotide pyrophosphatase/phosphodiesterase 2
Tissue enriched
Detected in many
choroid plexus:
279.3
EPHA7
ENSSSCG00000004336
ENSG00000135333
EPH receptor A7
Tissue enhanced
Detected in many
brain:
41.3
smooth muscle:
21.2
EPPK1
ENSSSCG00000032203
ENSG00000261150
Epiplakin 1
Tissue enhanced
Detected in many
skin:
53.9
stomach:
50.8
ETV4
ENSSSCG00000017379
ENSG00000175832
ETS variant 4
Tissue enhanced
Detected in many
cartilage:
59.6
ETV5
ENSSSCG00000023229
ENSG00000244405
ETS translocation variant 5
Tissue enhanced
Detected in all
cartilage:
36.1
EVL
ENSSSCG00000037105
ENSG00000196405
Ena/VASP-like protein
Tissue enhanced
Detected in all
lymphoid tissue:
112.9
FAIM2
ENSSSCG00000000206
ENSG00000135472
Fas apoptotic inhibitory molecule 2
Tissue enhanced
Detected in many
brain:
65.4
pineal gland:
35.4
retina:
35.6
FAM135A
ENSSSCG00000004275
ENSG00000082269
Family with sequence similarity 135 member A
Low tissue specificity
Detected in all
FAM171A1
ENSSSCG00000011047
ENSG00000148468
Family with sequence similarity 171 member A1
Low tissue specificity
Detected in all
FAM43B
ENSSSCG00000030706
ENSG00000183114
Family with sequence similarity 43 member B
Tissue enhanced
Detected in many
kidney:
23.9
male glands:
20.7
stomach:
22.1
FAM46A
ENSSSCG00000004464
ENSG00000112773
Family with sequence similarity 46 member A
Low tissue specificity
Detected in all
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