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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CGNL1
ENSSSCG00000035038
ENSG00000128849
Cingulin like 1
Tissue enhanced
Detected in many
kidney:
62.8
thyroid gland:
72.5
CGREF1
ENSSSCG00000008555
ENSG00000138028
Cell growth regulator with EF-hand domain 1
Tissue enhanced
Detected in many
esophagus:
36.8
male glands:
137.1
salivary gland:
40.7
CHAD
ENSSSCG00000017569
ENSG00000136457
Chondroadherin
Tissue enriched
Detected in many
cartilage:
273.3
CHCHD10
ENSSSCG00000010073
ENSG00000250479
Coiled-coil-helix-coiled-coil-helix domain containing 10
Tissue enhanced
Detected in all
heart:
175.7
skeletal muscle:
132.4
CHCHD5
ENSSSCG00000008094
ENSG00000125611
Coiled-coil-helix-coiled-coil-helix domain containing 5
Tissue enhanced
Detected in all
lens:
70.4
testis:
52.8
CHD1L
ENSSSCG00000006701
ENSG00000131778
Chromodomain helicase DNA binding protein 1 like
Low tissue specificity
Detected in all
CHIC1
ENSSSCG00000012416
ENSG00000204116
Cysteine rich hydrophobic domain 1
Low tissue specificity
Detected in many
CHKA
ENSSSCG00000012889
ENSG00000110721
Choline kinase alpha
Tissue enhanced
Detected in all
male glands:
41.6
CHMP4A
ENSSSCG00000033432
ENSG00000254505
Charged multivesicular body protein 4A
Low tissue specificity
Detected in many
CHMP5
ENSSSCG00000010995
ENSG00000086065
Charged multivesicular body protein 5
Low tissue specificity
Detected in all
CHP2
ENSSSCG00000034827
ENSG00000166869
Calcineurin like EF-hand protein 2
Tissue enhanced
Detected in all
large intestine:
42.1
small intestine:
34.1
CHRNA1
ENSSSCG00000015969
ENSG00000138435
Cholinergic receptor nicotinic alpha 1 subunit
Low tissue specificity
Detected in all
CHST3
ENSSSCG00000023662
ENSG00000122863
Carbohydrate sulfotransferase 3
Tissue enhanced
Detected in many
cartilage:
38.4
CHST9
ENSSSCG00000003721
ENSG00000154080
Carbohydrate sulfotransferase 9
Tissue enhanced
Detected in many
endometrium:
15.0
fallopian tube:
29.3
gallbladder:
24.9
pituitary gland:
14.7
CHURC1
ENSSSCG00000022147
ENSG00000258289
Churchill domain containing 1
Low tissue specificity
Detected in all
CIDEC
ENSSSCG00000011557
ENSG00000187288
Cell death activator CIDE-3
Tissue enhanced
Detected in all
adipose tissue:
91.0
aorta:
46.0
bone marrow:
48.0
CINP
ENSSSCG00000002530
ENSG00000100865
Cyclin dependent kinase 2 interacting protein
Tissue enhanced
Detected in all
lens:
67.8
CISD2
ENSSSCG00000009164
ENSG00000145354
CDGSH iron sulfur domain 2
Tissue enhanced
Detected in all
male glands:
44.6
CITED1
ENSSSCG00000012409
ENSG00000125931
Cbp/p300-interacting transactivator 1
Tissue enhanced
Detected in many
adrenal gland:
47.3
testis:
101.4
CITED4
ENSSSCG00000033952
ENSG00000179862
Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4
Tissue enhanced
Detected in many
male glands:
43.1
salivary gland:
72.2
upper respiratory system:
46.4
CKAP2
ENSSSCG00000009378
ENSG00000136108
Cytoskeleton associated protein 2
Tissue enhanced
Detected in many
lymphoid tissue:
32.9
CKAP4
ENSSSCG00000000171
ENSG00000136026
Cytoskeleton-associated protein 4
Tissue enhanced
Detected in all
cartilage:
61.8
ovary:
56.8
CKB
ENSSSCG00000021220
ENSG00000166165
Creatine kinase B-type
Tissue enhanced
Detected in many
brain:
121.7
pineal gland:
104.9
retina:
70.4
smooth muscle:
65.9
CLCA1
ENSSSCG00000006933
ENSG00000016490
Chloride channel accessory 1
Tissue enhanced
Detected in some
esophagus:
245.3
male glands:
91.9
upper respiratory system:
255.5
CLCA2
ENSSSCG00000006935
ENSG00000137975
Chloride channel accessory 2
Tissue enhanced
Detected in all
cornea:
39.9
male glands:
40.5
skin:
26.2
CLCF1
ENSSSCG00000012915
ENSG00000175505
Cardiotrophin like cytokine factor 1
Low tissue specificity
Detected in all
CLDN15
ENSSSCG00000038901
ENSG00000106404
Claudin-15
Group enriched
Detected in many
adipose tissue:
17.5
mesothelial tissue:
34.7
small intestine:
57.1
CLDN22
ENSSSCG00000027901
Claudin-22
Group enriched
Detected in many
endometrium:
20.8
esophagus:
15.0
male glands:
30.8
salivary gland:
47.0
upper respiratory system:
24.4
CLDN23
ENSSSCG00000006966
ENSG00000253958
Claudin-23
Tissue enhanced
Detected in many
male glands:
33.3
CLDN7
ENSSSCG00000017934
ENSG00000181885
Claudin-7 precursor
Tissue enhanced
Detected in many
large intestine:
56.5
male glands:
40.9
CLDN8
ENSSSCG00000012030
ENSG00000156284
Claudin-8
Tissue enhanced
Detected in many
breast:
64.0
kidney:
44.5
male glands:
37.7
thyroid gland:
54.2
CLEC2L
ENSSSCG00000038147
ENSG00000236279
C-type lectin domain family 2 member L
Group enriched
Detected in some
brain:
30.5
choroid plexus:
8.1
heart:
26.3
retina:
8.6
CLGN
ENSSSCG00000026360
ENSG00000153132
Calmegin precursor
Group enriched
Detected in many
choroid plexus:
20.8
male glands:
21.9
testis:
81.2
CLIC4
ENSSSCG00000038994
ENSG00000169504
Chloride intracellular channel 4
Low tissue specificity
Detected in all
CLINT1
ENSSSCG00000017047
ENSG00000113282
Clathrin interactor 1
Tissue enhanced
Detected in all
male glands:
88.1
CLIP4
ENSSSCG00000008535
ENSG00000115295
CAP-Gly domain containing linker protein family member 4
Tissue enhanced
Detected in many
testis:
43.0
vagus nerve:
34.0
CLMN
ENSSSCG00000002494
ENSG00000165959
Calmin (calponin-like, transmembrane)
Tissue enhanced
Detected in all
testis:
60.7
CLN6
ENSSSCG00000004957
ENSG00000128973
Ceroid-lipofuscinosis neuronal protein 6
Low tissue specificity
Detected in all
CLU
ENSSSCG00000009668
ENSG00000120885
Clusterin Clusterin beta chain Clusterin alpha chain
Tissue enhanced
Detected in all
cartilage:
638.2
CMAS
ENSSSCG00000034733
ENSG00000111726
Cytidine monophosphate N-acetylneuraminic acid synthetase
Low tissue specificity
Detected in all
CMPK1
ENSSSCG00000003885
ENSG00000162368
Cytidine/uridine monophosphate kinase 1
Low tissue specificity
Detected in all
CMTM6
ENSSSCG00000038362
ENSG00000091317
CKLF like MARVEL transmembrane domain containing 6
Low tissue specificity
Detected in all
CMTM8
ENSSSCG00000022618
ENSG00000170293
CKLF like MARVEL transmembrane domain containing 8
Tissue enhanced
Detected in many
male glands:
57.0
CNDP1
ENSSSCG00000004869
ENSG00000150656
Beta-Ala-His dipeptidase
Tissue enhanced
Detected in many
brain:
15.7
epididymis:
26.7
kidney:
52.6
CNEP1R1
ENSSSCG00000036005
ENSG00000205423
CTD nuclear envelope phosphatase 1 regulatory subunit 1
Low tissue specificity
Detected in all
CNIH4
ENSSSCG00000035034
ENSG00000143771
Cornichon family AMPA receptor auxiliary protein 4
Low tissue specificity
Detected in all
CNN1
ENSSSCG00000013614
ENSG00000130176
Calponin-1
Tissue enhanced
Detected in many
smooth muscle:
549.0
urinary bladder:
230.6
CNN3
ENSSSCG00000006887
ENSG00000117519
Calponin 3
Low tissue specificity
Detected in all
CNOT7
ENSSSCG00000006983
ENSG00000198791
CCR4-NOT transcription complex subunit 7
Low tissue specificity
Detected in all
CNTD2
ENSSSCG00000002990
ENSG00000105219
Cyclin N-terminal domain containing 2
Tissue enhanced
Detected in many
male glands:
10.0
thyroid gland:
18.8
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