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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CCL21
ENSSSCG00000038162
ENSG00000137077
C-C motif chemokine 21 precursor
Tissue enhanced
Detected in all
lymphoid tissue:
111.9
ovary:
39.7
CCL27
ENSSSCG00000010967
ENSG00000213927
C-C motif chemokine 27 precursor
Tissue enriched
Detected in some
skin:
80.9
CCL28
ENSSSCG00000016871
ENSG00000151882
C-C motif chemokine 28 precursor
Tissue enhanced
Detected in many
endometrium:
49.2
male glands:
37.9
salivary gland:
37.3
upper respiratory system:
29.0
CCM2L
ENSSSCG00000007239
ENSG00000101331
CCM2 like scaffolding protein
Low tissue specificity
Detected in all
CCNB1IP1
ENSSSCG00000002144
ENSG00000100814
Cyclin B1 interacting protein 1
Low tissue specificity
Detected in all
CCND3
ENSSSCG00000032284
ENSG00000112576
G1/S-specific cyclin-D3
Low tissue specificity
Detected in all
CCNF
ENSSSCG00000026326
ENSG00000162063
Cyclin F
Tissue enhanced
Detected in many
epididymis:
32.5
lymphoid tissue:
15.4
CCNG1
ENSSSCG00000017024
ENSG00000113328
Cyclin-G1
Tissue enriched
Detected in all
lens:
343.5
CCPG1
ENSSSCG00000004610
ENSG00000260916
Cell cycle progression protein 1
Low tissue specificity
Detected in all
CCSAP
ENSSSCG00000023776
ENSG00000154429
Centriole, cilia and spindle associated protein
Tissue enhanced
Detected in many
brain:
31.4
CCSER2
ENSSSCG00000010351
ENSG00000107771
Coiled-coil serine rich protein 2
Low tissue specificity
Detected in all
CCT2
ENSSSCG00000000496
ENSG00000166226
T-complex protein 1 subunit beta
Tissue enhanced
Detected in all
lens:
68.1
CCT8
ENSSSCG00000026761
ENSG00000156261
Chaperonin containing TCP1 subunit 8
Low tissue specificity
Detected in all
CD164
ENSSSCG00000004414
ENSG00000135535
CD164 molecule
Tissue enriched
Detected in all
male glands:
185.5
CD164L2
ENSSSCG00000003575
ENSG00000174950
CD164 molecule like 2
Low tissue specificity
Detected in all
CD247
ENSSSCG00000006309
ENSG00000198821
T-cell surface glycoprotein CD3 zeta chain precursor
Tissue enhanced
Detected in many
lymphoid tissue:
72.3
testis:
28.8
CD320
ENSSSCG00000032833
ENSG00000167775
CD320 molecule
Tissue enhanced
Detected in all
fallopian tube:
35.4
male glands:
40.1
CD3G
ENSSSCG00000015094
ENSG00000160654
T-cell surface glycoprotein CD3 gamma chain
Tissue enhanced
Detected in all
lymphoid tissue:
57.1
CD44
ENSSSCG00000013297
ENSG00000026508
CD44 molecule (Indian blood group)
Tissue enhanced
Detected in many
male glands:
96.2
salivary gland:
142.4
CD52
ENSSSCG00000040957
ENSG00000169442
CAMPATH-1 antigen precursor
Group enriched
Detected in some
ductus deferens:
181.8
epididymis:
47.2
CD6
ENSSSCG00000013111
ENSG00000013725
CD6 molecule
Tissue enhanced
Detected in many
lymphoid tissue:
35.4
stomach:
30.2
CD63
ENSSSCG00000000361
ENSG00000135404
CD63 molecule
Low tissue specificity
Detected in all
CD68
ENSSSCG00000017956
ENSG00000129226
Macrosialin precursor
Tissue enhanced
Detected in many
lymphoid tissue:
102.3
synovial tissue:
49.3
CD9
ENSSSCG00000022230
ENSG00000010278
CD9 antigen
Low tissue specificity
Detected in all
CDA
ENSSSCG00000021259
ENSG00000158825
Cytidine deaminase
Tissue enhanced
Detected in many
cartilage:
51.0
male glands:
51.9
CDC42BPB
ENSSSCG00000002523
ENSG00000198752
CDC42 binding protein kinase beta
Low tissue specificity
Detected in all
CDC42EP5
ENSSSCG00000039922
ENSG00000167617
CDC42 effector protein 5
Tissue enhanced
Detected in many
male glands:
165.6
CDH1
ENSSSCG00000025652
ENSG00000039068
Cadherin-1 precursor
Tissue enhanced
Detected in many
male glands:
78.6
CDK16
ENSSSCG00000012269
ENSG00000102225
Cyclin dependent kinase 16
Low tissue specificity
Detected in all
CDK6
ENSSSCG00000040183
ENSG00000105810
Cyclin dependent kinase 6
Tissue enhanced
Detected in all
lymphoid tissue:
52.9
CDKN3
ENSSSCG00000005047
ENSG00000100526
Cyclin-dependent kinase inhibitor 3
Tissue enhanced
Detected in all
testis:
63.9
CDO1
ENSSSCG00000014219
ENSG00000129596
Cysteine dioxygenase type 1
Group enriched
Detected in many
lens:
88.3
liver:
54.7
male glands:
203.4
CDR1
ENSSSCG00000036655
ENSG00000184258
Cerebellar degeneration related protein 1
Group enriched
Detected in many
brain:
791.0
choroid plexus:
541.4
pineal gland:
560.1
CDR2L
ENSSSCG00000017218
ENSG00000109089
Cerebellar degeneration related protein 2 like
Low tissue specificity
Detected in all
CDYL2
ENSSSCG00000038128
ENSG00000166446
Chromodomain Y like 2
Tissue enhanced
Detected in all
adrenal gland:
33.5
CEBPA
ENSSSCG00000002866
ENSG00000245848
CCAAT/enhancer binding protein alpha
Tissue enhanced
Detected in many
adipose tissue:
149.5
bone marrow:
77.5
CELSR1
ENSSSCG00000031361
ENSG00000075275
Cadherin EGF LAG seven-pass G-type receptor 1
Low tissue specificity
Detected in many
CENPI
ENSSSCG00000012491
ENSG00000102384
Centromere protein I
Low tissue specificity
Detected in all
CEP112
ENSSSCG00000023992
ENSG00000154240
Centrosomal protein 112
Low tissue specificity
Detected in all
CEP131
ENSSSCG00000017143
ENSG00000141577
Centrosomal protein 131
Tissue enhanced
Detected in all
cartilage:
35.2
CEP85L
ENSSSCG00000004249
ENSG00000111860
Centrosomal protein 85 like
Low tissue specificity
Detected in all
CEPT1
ENSSSCG00000029918
ENSG00000134255
Choline/ethanolamine phosphotransferase 1
Tissue enhanced
Detected in all
male glands:
43.3
CERS2
ENSSSCG00000006644
ENSG00000143418
Ceramide synthase 2
Tissue enhanced
Detected in all
brain:
92.5
CERS4
ENSSSCG00000013595
ENSG00000090661
Ceramide synthase 4
Tissue enriched
Detected in many
epididymis:
111.9
CFAP54
ENSSSCG00000033574
ENSG00000188596
Cilia and flagella associated protein 54
Tissue enhanced
Detected in many
choroid plexus:
31.6
fallopian tube:
62.8
upper respiratory system:
24.1
CFAP69
ENSSSCG00000015303
ENSG00000105792
Cilia and flagella associated protein 69
Tissue enhanced
Detected in many
choroid plexus:
19.0
fallopian tube:
34.0
testis:
23.8
CFAP70
ENSSSCG00000010298
ENSG00000156042
Cilia and flagella associated protein 70
Tissue enhanced
Detected in many
fallopian tube:
28.7
testis:
53.2
CFAP74
ENSSSCG00000030513
ENSG00000142609
Cilia and flagella associated protein 74
Tissue enhanced
Detected in many
kidney:
23.9
lung:
25.6
CFD
ENSSSCG00000013418
ENSG00000197766
Complement factor D
Tissue enhanced
Detected in many
gallbladder:
125.8
small intestine:
98.3
stomach:
122.6
CGA
ENSSSCG00000025434
ENSG00000135346
Glycoprotein hormones alpha chain
Tissue enriched
Detected in some
pituitary gland:
401.1
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