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Chromosome
1
2
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8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CNTNAP4
ENSSSCG00000023125
ENSG00000152910
Contactin associated protein like 4
Group enriched
Detected in some
brain:
25.8
fallopian tube:
6.5
male glands:
22.4
pituitary gland:
11.4
COA3
ENSSSCG00000017388
ENSG00000183978
Cytochrome c oxidase assembly factor 3
Low tissue specificity
Detected in all
COL18A1
ENSSSCG00000038089
ENSG00000182871
Collagen type XVIII alpha 1 chain
Tissue enhanced
Detected in many
liver:
94.5
COL23A1
ENSSSCG00000014029
ENSG00000050767
Collagen type XXIII alpha 1 chain
Tissue enhanced
Detected in many
ductus deferens:
29.1
epididymis:
45.5
thyroid gland:
24.9
COL27A1
ENSSSCG00000005487
ENSG00000196739
Collagen type XXVII alpha 1 chain
Tissue enriched
Detected in many
cartilage:
132.1
COL8A1
ENSSSCG00000011973
ENSG00000144810
Collagen type VIII alpha 1 chain
Tissue enhanced
Detected in many
cartilage:
78.5
cornea:
48.6
dura mater:
40.6
COLCA2
ENSSSCG00000015019
ENSG00000214290
Colorectal cancer associated 2
Tissue enhanced
Detected in many
adrenal gland:
39.6
epididymis:
35.6
liver:
28.3
stomach:
35.9
COMMD2
ENSSSCG00000011705
ENSG00000114744
COMM domain containing 2
Tissue enhanced
Detected in all
choroid plexus:
35.9
COMMD6
ENSSSCG00000009464
ENSG00000136111
COMM domain-containing protein 6
Tissue enhanced
Detected in all
adrenal gland:
101.6
COMMD8
ENSSSCG00000033373
ENSG00000169019
COMM domain containing 8
Tissue enhanced
Detected in all
lens:
32.4
COPA
ENSSSCG00000006386
ENSG00000122218
Coatomer protein complex subunit alpha
Low tissue specificity
Detected in all
COPB1
ENSSSCG00000013392
ENSG00000129083
Coatomer subunit beta
Tissue enhanced
Detected in all
male glands:
88.3
COPB2
ENSSSCG00000011662
ENSG00000184432
Coatomer protein complex subunit beta 2
Tissue enhanced
Detected in all
male glands:
114.9
COPS2
ENSSSCG00000004652
ENSG00000166200
COP9 signalosome complex subunit 2
Low tissue specificity
Detected in all
COPZ1
ENSSSCG00000000290
ENSG00000111481
Coatomer protein complex subunit zeta 1
Tissue enhanced
Detected in all
male glands:
114.8
COPZ2
ENSSSCG00000017526
ENSG00000005243
Coatomer protein complex subunit zeta 2
Low tissue specificity
Detected in all
COQ10A
ENSSSCG00000025190
ENSG00000135469
Coenzyme Q10A
Tissue enhanced
Detected in many
heart:
21.6
skeletal muscle:
52.3
COQ9
ENSSSCG00000025284
ENSG00000088682
Coenzyme Q9
Tissue enhanced
Detected in all
heart:
71.7
skeletal muscle:
80.6
CORO2B
ENSSSCG00000004962
ENSG00000103647
Coronin 2B
Tissue enhanced
Detected in many
brain:
52.5
COTL1
ENSSSCG00000037645
ENSG00000103187
Coactosin like F-actin binding protein 1
Tissue enriched
Detected in many
lens:
185.6
COX1
ENSSSCG00000018075
ENSG00000198804
Cytochrome c oxidase subunit 1
Tissue enhanced
Detected in all
heart:
2782.5
COX10
ENSSSCG00000018023
ENSG00000006695
COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase
Low tissue specificity
Detected in all
COX16
ENSSSCG00000002316
ENSG00000133983
COX16, cytochrome c oxidase assembly homolog
Tissue enhanced
Detected in all
lens:
34.1
COX2
ENSSSCG00000018078
ENSG00000198712
Cytochrome c oxidase subunit II (mitochondrion)
Tissue enhanced
Detected in all
heart:
2180.4
COX3
ENSSSCG00000018082
ENSG00000198938
Cytochrome c oxidase subunit 3
Tissue enhanced
Detected in all
heart:
2427.5
COX5B
ENSSSCG00000008195
ENSG00000135940
Cytochrome c oxidase subunit 5B, mitochondrial
Tissue enhanced
Detected in all
heart:
93.9
skeletal muscle:
105.6
COX6A1
ENSSSCG00000039265
ENSG00000111775
Cytochrome c oxidase subunit VIa polypeptide 1
Low tissue specificity
Detected in all
COX6C
ENSSSCG00000006070
ENSG00000164919
Cytochrome c oxidase subunit 6C
Low tissue specificity
Detected in all
COX7A2
ENSSSCG00000004480
Cytochrome c oxidase subunit 7A2, mitochondrial
Tissue enhanced
Detected in all
testis:
75.3
COX7A2L
ENSSSCG00000008466
ENSG00000115944
Cytochrome c oxidase subunit 7A2 like
Low tissue specificity
Detected in all
COX7B2
ENSSSCG00000036922
ENSG00000170516
Cytochrome c oxidase subunit 7B2
Tissue enriched
Detected in some
testis:
51.0
CP
ENSSSCG00000011700
ENSG00000047457
Ceruloplasmin precursor
Tissue enriched
Detected in many
liver:
192.8
CPD
ENSSSCG00000017799
ENSG00000108582
Carboxypeptidase D
Tissue enhanced
Detected in all
male glands:
86.0
CPEB3
ENSSSCG00000010468
ENSG00000107864
Cytoplasmic polyadenylation element binding protein 3
Tissue enhanced
Detected in all
salivary gland:
51.1
CPED1
ENSSSCG00000016618
ENSG00000106034
Cadherin like and PC-esterase domain containing 1
Low tissue specificity
Detected in many
CPLX1
ENSSSCG00000037527
ENSG00000168993
Complexin 1
Tissue enhanced
Detected in some
brain:
72.4
kidney:
15.6
retina:
24.1
CPLX3
ENSSSCG00000001895
ENSG00000213578
Complexin 3
Tissue enriched
Detected in some
retina:
81.8
CPNE5
ENSSSCG00000001567
ENSG00000124772
Copine 5
Tissue enriched
Detected in some
brain:
65.8
CPSF4L
ENSSSCG00000040611
ENSG00000187959
Cleavage and polyadenylation specific factor 4 like
Tissue enhanced
Detected in many
male glands:
23.9
retina:
20.1
salivary gland:
18.8
CPVL
ENSSSCG00000016688
ENSG00000106066
Carboxypeptidase, vitellogenic like
Tissue enhanced
Detected in many
male glands:
19.8
thyroid gland:
64.3
CPZ
ENSSSCG00000032151
ENSG00000109625
Carboxypeptidase Z
Tissue enhanced
Detected in many
cartilage:
27.7
skin:
25.7
CRABP1
ENSSSCG00000021873
ENSG00000166426
Cellular retinoic acid-binding protein 1
Tissue enriched
Detected in many
pineal gland:
321.9
CRACR2A
ENSSSCG00000000732
ENSG00000130038
Calcium release activated channel regulator 2A
Tissue enhanced
Detected in many
esophagus:
24.5
large intestine:
26.3
male glands:
37.7
salivary gland:
48.2
stomach:
23.2
CRACR2B
ENSSSCG00000023933
ENSG00000177685
EF-hand calcium-binding domain-containing protein 4A
Tissue enhanced
Detected in many
male glands:
58.9
salivary gland:
73.0
CRAMP1
ENSSSCG00000008026
ENSG00000007545
Cramped chromatin regulator homolog 1
Low tissue specificity
Detected in all
CRBN
ENSSSCG00000011530
ENSG00000113851
Cereblon
Tissue enhanced
Detected in all
lens:
55.5
CREB3
ENSSSCG00000005318
ENSG00000107175
Cyclic AMP-responsive element-binding protein 3
Tissue enriched
Detected in all
male glands:
104.0
CREB3L1
ENSSSCG00000013263
ENSG00000157613
CAMP responsive element binding protein 3 like 1
Tissue enhanced
Detected in all
esophagus:
81.9
male glands:
132.0
salivary gland:
90.7
stomach:
87.6
CREB3L4
ENSSSCG00000006560
ENSG00000143578
Cyclic AMP-responsive element-binding protein 3-like protein 4
Tissue enhanced
Detected in all
male glands:
52.6
CREB5
ENSSSCG00000016690
ENSG00000146592
CAMP responsive element binding protein 5
Tissue enhanced
Detected in many
cartilage:
153.5
synovial tissue:
46.5
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