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Chromosome
1
2
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7
8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CA10
ENSSSCG00000023169
ENSG00000154975
Carbonic anhydrase 10
Tissue enhanced
Detected in some
brain:
38.6
pineal gland:
34.4
retina:
18.7
CA12
ENSSSCG00000004565
ENSG00000074410
Carbonic anhydrase 12
Tissue enhanced
Detected in many
kidney:
102.2
large intestine:
56.6
male glands:
36.5
CA2
ENSSSCG00000006140
ENSG00000104267
Carbonic anhydrase 2
Tissue enhanced
Detected in many
choroid plexus:
70.9
stomach:
149.1
CA8
ENSSSCG00000006233
ENSG00000178538
Carbonic anhydrase 8
Tissue enhanced
Detected in many
brain:
39.4
male glands:
79.3
CAB39
ENSSSCG00000016266
ENSG00000135932
Calcium binding protein 39
Tissue enhanced
Detected in all
lens:
81.7
CABLES1
ENSSSCG00000003705
ENSG00000134508
Cdk5 and Abl enzyme substrate 1
Low tissue specificity
Detected in many
CACHD1
ENSSSCG00000004829
ENSG00000158966
Cache domain containing 1
Low tissue specificity
Detected in many
CACNA1D
ENSSSCG00000011455
ENSG00000157388
Calcium voltage-gated channel subunit alpha1 D
Tissue enhanced
Detected in many
adrenal gland:
52.2
male glands:
30.6
CACNB2
ENSSSCG00000011040
ENSG00000165995
Calcium voltage-gated channel auxiliary subunit beta 2
Low tissue specificity
Detected in all
CACNB4
ENSSSCG00000029073
ENSG00000182389
Voltage-dependent L-type calcium channel subunit beta-4
Tissue enriched
Detected in many
brain:
64.8
CALD1
ENSSSCG00000016535
ENSG00000122786
Caldesmon 1
Tissue enhanced
Detected in all
smooth muscle:
183.5
CALM1
ENSSSCG00000025768
Calmodulin
Tissue enhanced
Detected in all
brain:
160.5
CALML4
ENSSSCG00000026517
ENSG00000129007
Calmodulin-like 4
Tissue enhanced
Detected in many
choroid plexus:
49.8
CAMK1D
ENSSSCG00000011111
ENSG00000183049
Calcium/calmodulin-dependent protein kinase type 1D
Tissue enhanced
Detected in many
epididymis:
48.3
CAMK2D
ENSSSCG00000009123
ENSG00000145349
Calcium/calmodulin-dependent protein kinase type II subunit delta
Tissue enhanced
Detected in all
heart:
155.3
CAMK2N1
ENSSSCG00000024009
ENSG00000162545
Calcium/calmodulin dependent protein kinase II inhibitor 1
Tissue enriched
Detected in many
brain:
117.1
CAMKK1
ENSSSCG00000017873
ENSG00000004660
Calcium/calmodulin dependent protein kinase kinase 1
Tissue enhanced
Detected in many
lymphoid tissue:
38.2
CAMSAP1
ENSSSCG00000005753
ENSG00000130559
Calmodulin regulated spectrin associated protein 1
Low tissue specificity
Detected in all
CAND1
ENSSSCG00000028869
ENSG00000111530
Cullin associated and neddylation dissociated 1
Low tissue specificity
Detected in all
CANT1
ENSSSCG00000038130
ENSG00000171302
Calcium activated nucleotidase 1
Low tissue specificity
Detected in all
CAPN2
ENSSSCG00000029411
ENSG00000162909
Calpain-2 catalytic subunit
Low tissue specificity
Detected in all
CAPN6
ENSSSCG00000012584
ENSG00000077274
Calpain 6
Tissue enriched
Detected in many
cartilage:
177.0
CAPZA1
ENSSSCG00000006775
ENSG00000116489
F-actin-capping protein subunit alpha-1
Low tissue specificity
Detected in all
CAPZA2
ENSSSCG00000028113
F-actin-capping protein subunit alpha-2
Low tissue specificity
Detected in all
CARD14
ENSSSCG00000017154
ENSG00000141527
Caspase recruitment domain family member 14
Tissue enhanced
Detected in some
male glands:
33.3
salivary gland:
28.2
skin:
24.6
CARD9
ENSSSCG00000031715
ENSG00000187796
Caspase recruitment domain family member 9
Tissue enhanced
Detected in many
lymphoid tissue:
36.5
CASC4
ENSSSCG00000023996
ENSG00000166734
Cancer susceptibility 4
Low tissue specificity
Detected in all
CASK
ENSSSCG00000012253
ENSG00000147044
Calcium/calmodulin dependent serine protein kinase
Low tissue specificity
Detected in all
CASP3
ENSSSCG00000034012
ENSG00000164305
Caspase-3
Low tissue specificity
Detected in all
CASQ2
ENSSSCG00000006745
ENSG00000118729
Calsequestrin 2
Tissue enriched
Detected in many
heart:
100.4
CAV2
ENSSSCG00000016635
ENSG00000105971
Caveolin-2
Low tissue specificity
Detected in many
CAVIN3
ENSSSCG00000014633
ENSG00000170955
Caveolae associated protein 3
Low tissue specificity
Detected in many
CBFB
ENSSSCG00000033811
ENSG00000067955
Core-binding factor beta subunit
Low tissue specificity
Detected in all
CBR2
ENSSSCG00000031851
Carbonyl reductase
Group enriched
Detected in many
liver:
177.7
lung:
292.2
upper respiratory system:
105.0
CCDC107
ENSSSCG00000005313
ENSG00000159884
Coiled-coil domain containing 107
Tissue enhanced
Detected in all
male glands:
305.8
CCDC149
ENSSSCG00000023001
ENSG00000181982
Coiled-coil domain containing 149
Tissue enhanced
Detected in all
male glands:
56.4
CCDC151
ENSSSCG00000013625
ENSG00000198003
Coiled-coil domain containing 151
Group enriched
Detected in many
kidney:
30.6
male glands:
44.2
thyroid gland:
49.5
CCDC154
ENSSSCG00000028139
ENSG00000197599
Coiled-coil domain containing 154
Tissue enhanced
Detected in many
male glands:
18.7
testis:
18.2
CCDC178
ENSSSCG00000038703
ENSG00000166960
Coiled-coil domain containing 178
Tissue enriched
Detected in some
testis:
33.9
CCDC183
ENSSSCG00000005830
ENSG00000213213
Coiled-coil domain containing 183
Tissue enhanced
Detected in many
male glands:
15.9
retina:
18.6
salivary gland:
43.4
testis:
27.7
CCDC189
ENSSSCG00000007778
ENSG00000196118
Coiled-coil domain containing 189
Tissue enhanced
Detected in many
testis:
29.2
CCDC190
ENSSSCG00000006336
ENSG00000185860
Coiled-coil domain containing 190
Low tissue specificity
Detected in all
CCDC192
ENSSSCG00000034496
ENSG00000230561
Coiled-coil domain containing 192
Tissue enhanced
Detected in some
choroid plexus:
13.7
male glands:
7.2
salivary gland:
14.8
CCDC28A
ENSSSCG00000004148
ENSG00000024862
Coiled-coil domain-containing protein 28A
Tissue enhanced
Detected in all
male glands:
33.4
CCDC3
ENSSSCG00000011110
ENSG00000151468
Coiled-coil domain containing 3
Tissue enhanced
Detected in many
mesothelial tissue:
62.2
upper respiratory system:
64.7
CCDC68
ENSSSCG00000004534
ENSG00000166510
Coiled-coil domain containing 68
Tissue enhanced
Detected in all
male glands:
26.2
CCDC69
ENSSSCG00000040411
ENSG00000198624
Coiled-coil domain containing 69
Tissue enhanced
Detected in many
adipose tissue:
56.7
lymphoid tissue:
64.7
CCL16
ENSSSCG00000040940
ENSG00000275152
C-C motif chemokine ligand 16
Tissue enriched
Detected in many
liver:
145.0
CCL19
ENSSSCG00000010966
ENSG00000172724
C-C motif chemokine 19 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
113.4
CCL20
ENSSSCG00000016254
ENSG00000115009
C-C motif chemokine 20 precursor
Tissue enhanced
Detected in all
adrenal gland:
29.1
lymphoid tissue:
26.2
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