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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
BNIP3L
ENSSSCG00000009658
ENSG00000104765
BCL2 interacting protein 3 like
Low tissue specificity
Detected in all
BNIPL
ENSSSCG00000006640
ENSG00000163141
BCL2 interacting protein like
Tissue enhanced
Detected in many
mouth:
38.6
skin:
36.8
BOK
ENSSSCG00000032684
ENSG00000176720
BOK, BCL2 family apoptosis regulator
Tissue enhanced
Detected in all
thyroid gland:
55.8
BOLA1
ENSSSCG00000006667
ENSG00000178096
BolA-like protein 1
Tissue enhanced
Detected in all
male glands:
31.8
BSP1
ENSSSCG00000003053
Seminal plasma protein pB1 precursor
Tissue enriched
Detected in some
male glands:
499.5
BTBD1
ENSSSCG00000001801
ENSG00000064726
BTB domain containing 1
Tissue enhanced
Detected in all
heart:
54.2
skeletal muscle:
59.2
BTG2
ENSSSCG00000028322
ENSG00000159388
Protein BTG2
Low tissue specificity
Detected in many
BVES
ENSSSCG00000004366
ENSG00000112276
Blood vessel epicardial substance
Tissue enhanced
Detected in many
heart:
27.4
male glands:
20.3
skeletal muscle:
28.5
smooth muscle:
22.7
BZW1
ENSSSCG00000016094
ENSG00000082153
Basic leucine zipper and W2 domain-containing protein 1
Low tissue specificity
Detected in all
C10orf90
ENSSSCG00000010747
ENSG00000154493
Chromosome 10 open reading frame 90
Tissue enhanced
Detected in some
brain:
39.2
skin:
14.2
testis:
35.6
C11orf54
ENSSSCG00000014948
ENSG00000182919
Ester hydrolase C11orf54 homolog
Low tissue specificity
Detected in all
C11orf71
ENSSSCG00000036867
ENSG00000180425
Chromosome 11 open reading frame 71
Tissue enriched
Detected in some
testis:
227.2
C11orf96
ENSSSCG00000039182
ENSG00000187479
Chromosome 11 open reading frame 96
Tissue enhanced
Detected in many
aorta:
137.7
gallbladder:
125.2
C12orf10
ENSSSCG00000000267
ENSG00000139637
Chromosome 12 open reading frame 10
Low tissue specificity
Detected in all
C12orf56
ENSSSCG00000000464
ENSG00000185306
Chromosome 12 open reading frame 56
Tissue enhanced
Detected in many
esophagus:
8.9
male glands:
13.8
C12orf57
ENSSSCG00000040186
ENSG00000111678
Protein C10
Low tissue specificity
Detected in all
C12orf75
ENSSSCG00000031661
ENSG00000235162
Chromosome 12 open reading frame 75
Low tissue specificity
Detected in many
C14orf119
ENSSSCG00000002035
ENSG00000179933
Chromosome 14 open reading frame 119
Low tissue specificity
Detected in all
C14orf37
ENSSSCG00000005071
ENSG00000139971
Chromosome 14 open reading frame 37
Tissue enriched
Detected in many
pineal gland:
113.7
C15orf48
ENSSSCG00000004670
ENSG00000166920
Chromosome 15 open reading frame 48
Tissue enriched
Detected in many
large intestine:
98.8
C15orf61
ENSSSCG00000004954
ENSG00000189227
Chromosome 15 open reading frame 61
Tissue enhanced
Detected in many
lens:
69.9
C16orf74
ENSSSCG00000002662
ENSG00000154102
Chromosome 16 open reading frame 74
Tissue enhanced
Detected in all
cervix:
91.3
C17orf50
ENSSSCG00000033580
ENSG00000270806
Chromosome 17 open reading frame 50
Low tissue specificity
Detected in many
C17orf58
ENSSSCG00000032181
ENSG00000186665
Chromosome 17 open reading frame 58
Tissue enhanced
Detected in many
brain:
48.1
C17orf78
ENSSSCG00000017696
ENSG00000278505
Chromosome 17 open reading frame 78
Low tissue specificity
Detected in all
C18orf32
ENSSSCG00000034415
ENSG00000177576
Chromosome 18 open reading frame 32
Tissue enhanced
Detected in all
male glands:
53.3
C19orf24
ENSSSCG00000028040
ENSG00000228300
Chromosome 19 open reading frame 24
Group enriched
Detected in many
cartilage:
9.1
male glands:
34.2
ovary:
8.7
C19orf38
ENSSSCG00000013632
ENSG00000214212
Chromosome 19 open reading frame 38
Tissue enhanced
Detected in many
male glands:
32.4
C19orf70
ENSSSCG00000013524
ENSG00000174917
MICOS complex subunit MIC13 precursor
Low tissue specificity
Detected in all
C1orf116
ENSSSCG00000032446
ENSG00000182795
Chromosome 1 open reading frame 116
Tissue enhanced
Detected in many
kidney:
35.4
mouth:
34.5
C1orf123
ENSSSCG00000003850
ENSG00000162384
Chromosome 1 open reading frame 123
Low tissue specificity
Detected in all
C1orf21
ENSSSCG00000015565
ENSG00000116667
Chromosome 1 open reading frame 21
Tissue enhanced
Detected in all
skeletal muscle:
122.4
C1orf35
ENSSSCG00000013991
ENSG00000143793
Multiple myeloma tumor-associated protein 2
Low tissue specificity
Detected in all
C1QC
ENSSSCG00000038706
ENSG00000159189
Complement C1q subcomponent subunit C precursor
Tissue enhanced
Detected in many
lymphoid tissue:
98.3
synovial tissue:
86.3
C20orf196
ENSSSCG00000039269
ENSG00000171984
Chromosome 20 open reading frame 196
Low tissue specificity
Detected in all
C2CD2
ENSSSCG00000025821
ENSG00000157617
C2 calcium dependent domain containing 2
Tissue enhanced
Detected in all
retina:
48.7
C2CD4D
ENSSSCG00000021540
ENSG00000225556
C2 calcium dependent domain containing 4D
Tissue enhanced
Detected in many
cartilage:
23.9
lymphoid tissue:
34.3
male glands:
20.4
C2orf69
ENSSSCG00000016086
ENSG00000178074
Chromosome 2 open reading frame 69
Low tissue specificity
Detected in all
C2orf73
ENSSSCG00000008410
ENSG00000177994
Chromosome 2 open reading frame 73
Tissue enriched
Detected in all
testis:
57.8
C2orf76
ENSSSCG00000015718
ENSG00000186132
Chromosome 2 open reading frame 76
Low tissue specificity
Detected in all
C2orf80
ENSSSCG00000032040
ENSG00000188674
Chromosome 2 open reading frame 80
Low tissue specificity
Detected in all
C2orf88
ENSSSCG00000033941
ENSG00000187699
Chromosome 2 open reading frame 88
Tissue enhanced
Detected in all
heart:
57.9
C3orf20
ENSSSCG00000040594
ENSG00000131379
Chromosome 3 open reading frame 20
Tissue enriched
Detected in all
testis:
62.1
C3orf33
ENSSSCG00000021495
ENSG00000174928
Chromosome 3 open reading frame 33
Low tissue specificity
Detected in all
C3orf38
ENSSSCG00000034645
ENSG00000179021
Chromosome 3 open reading frame 38
Low tissue specificity
Detected in all
C4A
ENSSSCG00000001427
ENSG00000224389,ENSG00000244731
Complement C4-A precursor
Tissue enhanced
Detected in many
adipose tissue:
79.1
liver:
104.7
C5orf30
ENSSSCG00000038779
ENSG00000181751
Chromosome 5 open reading frame 30
Tissue enhanced
Detected in all
adrenal gland:
25.4
brain:
28.3
C6orf120
ENSSSCG00000038931
ENSG00000185127
Chromosome 6 open reading frame 120
Tissue enhanced
Detected in all
male glands:
49.6
C8orf88
ENSSSCG00000040562
ENSG00000253250
Chromosome 8 open reading frame 88
Tissue enhanced
Detected in all
lens:
83.5
C9orf3
ENSSSCG00000010943
ENSG00000148120
Chromosome 9 open reading frame 3
Low tissue specificity
Detected in all
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