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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
STX5
ENSSSCG00000026293
ENSG00000162236
Syntaxin-5
Group enriched
Detected in many
cartilage:
18.5
lens:
32.2
male glands:
55.3
STX7
ENSSSCG00000004190
ENSG00000079950
Syntaxin 7
Low tissue specificity
Detected in all
STXBP1
ENSSSCG00000005617
ENSG00000136854
Syntaxin binding protein 1
Group enriched
Detected in many
brain:
70.7
retina:
66.1
STXBP5
ENSSSCG00000004113
ENSG00000164506
Syntaxin binding protein 5
Low tissue specificity
Detected in all
STXBP6
ENSSSCG00000001977
ENSG00000168952
Syntaxin-binding protein 6
Tissue enhanced
Detected in all
male glands:
64.5
STYK1
ENSSSCG00000000634
ENSG00000060140
Serine/threonine/tyrosine kinase 1
Tissue enhanced
Detected in some
large intestine:
24.3
male glands:
14.9
stomach:
81.4
SUFU
ENSSSCG00000010586
ENSG00000107882
SUFU negative regulator of hedgehog signaling
Tissue enhanced
Detected in all
epididymis:
70.9
SULF2
ENSSSCG00000007456
ENSG00000196562
Sulfatase 2
Tissue enhanced
Detected in all
cartilage:
77.4
cornea:
58.6
SULT2B1
ENSSSCG00000023280
ENSG00000088002
Sulfotransferase family cytosolic 2B member 1
Tissue enhanced
Detected in many
ductus deferens:
19.4
mouth:
37.2
upper respiratory system:
26.7
SUMO1
ENSSSCG00000035842
ENSG00000116030
Small ubiquitin-related modifier 1
Low tissue specificity
Detected in all
SUMO2
ENSSSCG00000017212
ENSG00000188612
Small ubiquitin-related modifier 2
Low tissue specificity
Detected in all
SUSD1
ENSSSCG00000005465
ENSG00000106868
Sushi domain containing 1
Tissue enhanced
Detected in many
lymphoid tissue:
36.3
SUSD3
ENSSSCG00000022237
ENSG00000157303
Sushi domain containing 3
Tissue enhanced
Detected in many
lymphoid tissue:
39.3
SUV39H2
ENSSSCG00000011048
ENSG00000152455
Histone-lysine N-methyltransferase SUV39H2
Low tissue specificity
Detected in all
SVIP
ENSSSCG00000039613
ENSG00000198168
Small VCP interacting protein
Tissue enhanced
Detected in many
brain:
19.1
lens:
22.3
pituitary gland:
25.2
SVOPL
ENSSSCG00000016517
ENSG00000157703
SVOP like
Group enriched
Detected in some
lung:
33.0
male glands:
37.6
upper respiratory system:
23.3
SYBU
ENSSSCG00000006023
ENSG00000147642
Syntabulin
Tissue enhanced
Detected in many
brain:
49.8
SYNJ2
ENSSSCG00000012315
ENSG00000078269
Synaptojanin 2
Tissue enhanced
Detected in many
brain:
35.4
male glands:
35.5
SYT3
ENSSSCG00000003222
ENSG00000213023
Synaptotagmin 3
Tissue enhanced
Detected in many
brain:
16.3
skin:
14.5
SYT7
ENSSSCG00000021906
ENSG00000011347
Synaptotagmin 7
Tissue enhanced
Detected in many
brain:
38.8
SYT8
ENSSSCG00000023537
ENSG00000149043
Synaptotagmin 8
Group enriched
Detected in some
adrenal gland:
24.0
stomach:
56.2
urinary bladder:
21.8
SYTL1
ENSSSCG00000003572
ENSG00000142765
Synaptotagmin like 1
Tissue enhanced
Detected in many
cornea:
35.9
male glands:
35.4
stomach:
26.0
SYTL4
ENSSSCG00000012484
ENSG00000102362
Synaptotagmin like 4
Tissue enhanced
Detected in many
pituitary gland:
34.7
SYTL5
ENSSSCG00000012233
ENSG00000147041
Synaptotagmin like 5
Tissue enhanced
Detected in many
male glands:
39.9
stomach:
20.9
SZT2
ENSSSCG00000003941
ENSG00000198198
SZT2, KICSTOR complex subunit
Low tissue specificity
Detected in all
TACR2
ENSSSCG00000010254
ENSG00000075073
Tachykinin receptor 2
Tissue enriched
Detected in all
smooth muscle:
52.1
TACSTD2
ENSSSCG00000003832
ENSG00000184292
Tumor associated calcium signal transducer 2
Tissue enhanced
Detected in many
cornea:
60.8
upper respiratory system:
52.2
urinary bladder:
76.7
TAF12
ENSSSCG00000027530
ENSG00000120656
TATA-box binding protein associated factor 12
Low tissue specificity
Detected in all
TAGLN
ENSSSCG00000015073
ENSG00000149591
Transgelin
Tissue enhanced
Detected in many
smooth muscle:
633.1
TAL1
ENSSSCG00000035847
ENSG00000162367
TAL bHLH transcription factor 1, erythroid differentiation factor
Tissue enhanced
Detected in many
mesothelial tissue:
33.6
TANC2
ENSSSCG00000017298
ENSG00000170921
Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
Low tissue specificity
Detected in many
TANK
ENSSSCG00000015889
ENSG00000136560
TRAF family member associated NFKB activator
Low tissue specificity
Detected in all
TARS
ENSSSCG00000016817
ENSG00000113407
Threonyl-tRNA synthetase
Low tissue specificity
Detected in all
TARSL2
ENSSSCG00000005781
ENSG00000185418
Threonyl-tRNA synthetase like 2
Tissue enhanced
Detected in all
liver:
40.6
TAX1BP1
ENSSSCG00000016692
ENSG00000106052
Tax1 binding protein 1
Low tissue specificity
Detected in all
TBC1D1
ENSSSCG00000028983
ENSG00000065882
TBC1 domain family member 1
Low tissue specificity
Detected in all
TBC1D15
ENSSSCG00000000512
ENSG00000121749
TBC1 domain family member 15
Low tissue specificity
Detected in all
TBC1D16
ENSSSCG00000017159
ENSG00000167291
TBC1 domain family member 16
Low tissue specificity
Detected in many
TBC1D19
ENSSSCG00000008761
ENSG00000109680
TBC1 domain family member 19
Tissue enhanced
Detected in all
lens:
29.6
lymphoid tissue:
27.8
TBC1D8B
ENSSSCG00000022993
ENSG00000133138
TBC1 domain family member 8B
Tissue enhanced
Detected in many
male glands:
40.1
TBX2
ENSSSCG00000027060
ENSG00000121068
T-box transcription factor TBX2
Tissue enhanced
Detected in many
male glands:
41.4
TBX3
ENSSSCG00000009865
ENSG00000135111
T-box 3
Tissue enhanced
Detected in many
adrenal gland:
41.2
male glands:
87.6
thyroid gland:
38.6
TBX6
ENSSSCG00000034774
ENSG00000149922
T-box 6
Low tissue specificity
Detected in all
TC2N
ENSSSCG00000002443
ENSG00000165929
Tandem C2 domains, nuclear
Tissue enhanced
Detected in many
male glands:
33.1
upper respiratory system:
31.0
TCEA3
ENSSSCG00000032674
ENSG00000204219
Transcription elongation factor A3
Tissue enhanced
Detected in many
male glands:
79.9
skeletal muscle:
56.6
TCEAL1
ENSSSCG00000012532
ENSG00000172465
Transcription elongation factor A like 1
Low tissue specificity
Detected in all
TCF15
ENSSSCG00000036940
ENSG00000125878
Transcription factor 15
Low tissue specificity
Detected in all
TCF23
ENSSSCG00000027409
ENSG00000163792
Transcription factor 23
Tissue enhanced
Detected in all
cervix:
69.1
endometrium:
24.3
TCF7L1
ENSSSCG00000008241
ENSG00000152284
Transcription factor 7 like 1
Low tissue specificity
Detected in all
TCFL5
ENSSSCG00000038631
ENSG00000101190
Transcription factor like 5
Group enriched
Detected in many
cartilage:
90.0
testis:
31.2
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