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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SPCS1
ENSSSCG00000011447
ENSG00000114902
Signal peptidase complex subunit 1
Tissue enhanced
Detected in all
testis:
75.9
SPDEF
ENSSSCG00000036573
ENSG00000124664
SAM pointed domain-containing Ets transcription factor
Tissue enhanced
Detected in many
esophagus:
34.5
male glands:
76.2
salivary gland:
35.7
SPEF2
ENSSSCG00000016831
ENSG00000152582
Sperm flagellar protein 2
Tissue enhanced
Detected in many
choroid plexus:
35.6
fallopian tube:
41.3
testis:
33.7
SPG21
ENSSSCG00000004544
ENSG00000090487
Maspardin
Tissue enhanced
Detected in all
male glands:
64.5
SPINK14
ENSSSCG00000033173
ENSG00000196800
Serine peptidase inhibitor, Kazal type 14 (putative)
Tissue enriched
Detected in some
ductus deferens:
155.6
SPINK7
ENSSSCG00000022035
ENSG00000145879
Serine peptidase inhibitor, Kazal type 7 (putative)
Tissue enhanced
Detected in many
male glands:
22.2
testis:
40.7
SPINK9
ENSSSCG00000014426
ENSG00000204909
Serine peptidase inhibitor, Kazal type 9
Tissue enhanced
Detected in many
male glands:
28.6
SPINT2
ENSSSCG00000002954
ENSG00000167642
Serine peptidase inhibitor, Kunitz type 2
Tissue enhanced
Detected in many
male glands:
146.6
SPMI
ENSSSCG00000002977
Seminal plasma sperm motility inhibitor precursor
Tissue enriched
Detected in some
male glands:
2013.1
SPOPL
ENSSSCG00000032198
ENSG00000144228
Speckle type BTB/POZ protein like
Low tissue specificity
Detected in all
SPPL2A
ENSSSCG00000004635
ENSG00000138600
Signal peptide peptidase like 2A
Low tissue specificity
Detected in all
SPSB2
ENSSSCG00000025460
ENSG00000111671
SPRY domain-containing SOCS box protein 2
Tissue enhanced
Detected in all
male glands:
30.4
SPTBN2
ENSSSCG00000038508
ENSG00000173898
Spectrin beta, non-erythrocytic 2
Tissue enhanced
Detected in many
brain:
35.5
cornea:
32.4
testis:
42.8
SPTLC1
ENSSSCG00000009594
ENSG00000090054
Serine palmitoyltransferase long chain base subunit 1
Low tissue specificity
Detected in all
SPTY2D1
ENSSSCG00000013361
ENSG00000179119
SPT2 chromatin protein domain containing 1
Tissue enriched
Detected in all
male glands:
56.6
SRC
ENSSSCG00000007334
ENSG00000197122
SRC proto-oncogene, non-receptor tyrosine kinase
Low tissue specificity
Detected in all
SRCIN1
ENSSSCG00000018056
ENSG00000277363
SRC kinase signaling inhibitor 1
Group enriched
Detected in many
brain:
42.1
skin:
49.3
SRGAP3
ENSSSCG00000033624
ENSG00000196220
SLIT-ROBO Rho GTPase activating protein 3
Tissue enhanced
Detected in many
brain:
27.3
SRMS
ENSSSCG00000036706
ENSG00000125508
Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites
Tissue enhanced
Detected in some
male glands:
7.3
skin:
7.9
testis:
23.8
SRP14
ENSSSCG00000004785
ENSG00000140319
Signal recognition particle 14
Low tissue specificity
Detected in all
SRXN1
ENSSSCG00000023298
ENSG00000271303
Sulfiredoxin 1
Tissue enhanced
Detected in many
ovary:
41.0
SS18L2
ENSSSCG00000027711
ENSG00000008324
SS18 like 2
Tissue enhanced
Detected in all
male glands:
50.3
SSFA2
ENSSSCG00000038730
ENSG00000138434
Sperm specific antigen 2
Low tissue specificity
Detected in all
SSR4
ENSSSCG00000012784
ENSG00000180879
Signal sequence receptor subunit 4
Tissue enhanced
Detected in all
male glands:
127.4
SSTR1
ENSSSCG00000001938
ENSG00000139874
Somatostatin receptor type 1
Group enriched
Detected in some
brain:
21.2
male glands:
12.4
stomach:
10.6
testis:
5.4
SSX2IP
ENSSSCG00000003757
ENSG00000117155
SSX family member 2 interacting protein
Tissue enhanced
Detected in all
lens:
80.1
ST3GAL1
ENSSSCG00000005943
ENSG00000008513
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 1
Tissue enhanced
Detected in many
male glands:
52.0
small intestine:
51.7
ST3GAL4
ENSSSCG00000015232
ENSG00000110080
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 4
Tissue enriched
Detected in many
male glands:
175.5
ST3GAL6
ENSSSCG00000034493
ENSG00000064225
ST3 beta-galactoside alpha-2,3-sialyltransferase 6
Low tissue specificity
Detected in all
ST6GAL1
ENSSSCG00000025770
ENSG00000073849
ST6 beta-galactoside alpha-2,6-sialyltransferase 1
Tissue enhanced
Detected in many
liver:
102.6
ST6GALNAC1
ENSSSCG00000017172
ENSG00000070526
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1
Tissue enhanced
Detected in all
male glands:
80.3
ST6GALNAC2
ENSSSCG00000017177
ENSG00000070731
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2
Low tissue specificity
Detected in many
ST8SIA5
ENSSSCG00000032053
ENSG00000101638
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
Tissue enhanced
Detected in all
adrenal gland:
26.0
brain:
43.6
choroid plexus:
29.2
STAC2
ENSSSCG00000017508
ENSG00000141750
SH3 and cysteine rich domain 2
Tissue enhanced
Detected in many
breast:
99.5
male glands:
26.4
STAG2
ENSSSCG00000012642
ENSG00000101972
Stromal antigen 2
Low tissue specificity
Detected in all
STAM2
ENSSSCG00000016399
ENSG00000115145
Signal transducing adaptor molecule 2
Low tissue specificity
Detected in all
STAP1
ENSSSCG00000008923
ENSG00000035720
Signal transducing adaptor family member 1
Tissue enhanced
Detected in many
lymphoid tissue:
27.0
STARD9
ENSSSCG00000022039
ENSG00000159433
StAR related lipid transfer domain containing 9
Tissue enhanced
Detected in all
vagus nerve:
46.1
STC2
ENSSSCG00000016983
ENSG00000113739
Stanniocalcin-2 precursor
Tissue enhanced
Detected in all
cartilage:
31.8
STEAP3
ENSSSCG00000029304
ENSG00000115107
STEAP3 metalloreductase
Tissue enhanced
Detected in many
liver:
45.4
STK17B
ENSSSCG00000016067
ENSG00000081320
Serine/threonine kinase 17b
Tissue enhanced
Detected in many
lymphoid tissue:
56.8
male glands:
32.5
STK39
ENSSSCG00000022496
ENSG00000198648
Serine/threonine kinase 39
Tissue enhanced
Detected in many
choroid plexus:
76.5
lens:
59.8
salivary gland:
59.5
STMN2
ENSSSCG00000006160
ENSG00000104435
Stathmin 2
Group enriched
Detected in many
brain:
88.4
pineal gland:
62.2
STOM
ENSSSCG00000036639
ENSG00000148175
Stomatin
Low tissue specificity
Detected in all
STRA6
ENSSSCG00000001909
ENSG00000137868
Stimulated by retinoic acid 6
Tissue enhanced
Detected in many
kidney:
79.5
lens:
35.1
STRAP
ENSSSCG00000021410
ENSG00000023734
Serine/threonine kinase receptor associated protein
Low tissue specificity
Detected in all
STRIP2
ENSSSCG00000016567
ENSG00000128578
Striatin interacting protein 2
Tissue enhanced
Detected in many
brain:
52.9
pineal gland:
26.5
STT3A
ENSSSCG00000015214
ENSG00000134910
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A
Low tissue specificity
Detected in all
STT3B
ENSSSCG00000011229
ENSG00000163527
STT3B, catalytic subunit of the oligosaccharyltransferase complex
Low tissue specificity
Detected in all
STX3
ENSSSCG00000013119
ENSG00000166900
Syntaxin 3
Tissue enhanced
Detected in many
retina:
73.9
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