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Keyword
Chromosome
1
2
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6
7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SMAD9
ENSSSCG00000009357
ENSG00000120693
Mothers against decapentaplegic homolog 9
Low tissue specificity
Detected in many
SMARCA1
ENSSSCG00000012649
ENSG00000102038
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
Tissue enhanced
Detected in all
ovary:
104.0
SMC5
ENSSSCG00000005255
ENSG00000198887
Structural maintenance of chromosomes 5
Low tissue specificity
Detected in all
SMCO4
ENSSSCG00000031295
ENSG00000166002
Single-pass membrane protein with coiled-coil domains 4
Tissue enhanced
Detected in many
lens:
126.6
male glands:
108.8
salivary gland:
83.3
SMIM12
ENSSSCG00000031642
ENSG00000163866
Small integral membrane protein 12
Low tissue specificity
Detected in all
SMIM14
ENSSSCG00000021793
ENSG00000163683
Small integral membrane protein 14
Tissue enhanced
Detected in all
male glands:
106.1
SMIM18
ENSSSCG00000033236
ENSG00000253457
Small integral membrane protein 18
Tissue enhanced
Detected in many
brain:
16.1
pineal gland:
30.5
SMIM26
ENSSSCG00000025589
ENSG00000232388
Small integral membrane protein 26
Low tissue specificity
Detected in all
SMIM32
ENSSSCG00000040031
ENSG00000271824
Small integral membrane protein 32
Tissue enhanced
Detected in many
brain:
27.6
male glands:
20.0
pineal gland:
19.9
SMIM4
ENSSSCG00000034529
ENSG00000168273
Small integral membrane protein 4
Tissue enhanced
Detected in all
lens:
61.2
SMIM5
ENSSSCG00000038844
ENSG00000204323
Small integral membrane protein 5
Tissue enhanced
Detected in many
cartilage:
53.1
salivary gland:
28.4
SMIM7
ENSSSCG00000013863
ENSG00000214046,ENSG00000268790
Small integral membrane protein 7
Tissue enriched
Detected in all
lens:
152.5
SMO
ENSSSCG00000016569
ENSG00000128602
Smoothened, frizzled class receptor
Tissue enhanced
Detected in many
cartilage:
68.4
SMOC2
ENSSSCG00000004013
ENSG00000112562
SPARC related modular calcium binding 2
Tissue enhanced
Detected in many
cervix:
64.8
ductus deferens:
56.4
endometrium:
41.5
SMPDL3A
ENSSSCG00000004233
ENSG00000172594
Sphingomyelin phosphodiesterase acid like 3A
Tissue enhanced
Detected in many
male glands:
34.9
SMPDL3B
ENSSSCG00000003582
ENSG00000130768
Sphingomyelin phosphodiesterase acid like 3B
Tissue enhanced
Detected in all
liver:
63.2
SMU1
ENSSSCG00000010999
ENSG00000122692
WD40 repeat-containing protein SMU1
Low tissue specificity
Detected in all
SNAP23
ENSSSCG00000038735
ENSG00000092531
Synaptosomal-associated protein 23
Low tissue specificity
Detected in all
SNAPC4
ENSSSCG00000038262
ENSG00000165684
Small nuclear RNA activating complex polypeptide 4
Low tissue specificity
Detected in all
SNCG
ENSSSCG00000026850
ENSG00000173267
Gamma-synuclein
Tissue enriched
Detected in many
lens:
267.5
SNED1
ENSSSCG00000016381
ENSG00000162804
Sushi, nidogen and EGF like domains 1
Tissue enhanced
Detected in many
cartilage:
74.6
synovial tissue:
37.6
SNN
ENSSSCG00000007897
ENSG00000184602
Stannin
Tissue enhanced
Detected in all
brain:
58.5
lens:
50.1
SNPH
ENSSSCG00000039392
ENSG00000101298
Syntaphilin
Tissue enhanced
Detected in many
brain:
23.9
male glands:
18.0
SNRPB2
ENSSSCG00000037602
ENSG00000125870
U2 small nuclear ribonucleoprotein B''
Low tissue specificity
Detected in all
SNRPC
ENSSSCG00000001531
ENSG00000124562
U1 small nuclear ribonucleoprotein C
Tissue enhanced
Detected in all
testis:
91.4
SNRPD2
ENSSSCG00000033500
ENSG00000125743
Small nuclear ribonucleoprotein Sm D2
Low tissue specificity
Detected in all
SNRPE
ENSSSCG00000023562
ENSG00000182004
Small nuclear ribonucleoprotein E
Low tissue specificity
Detected in all
SNRPF
ENSSSCG00000000895
ENSG00000139343
Small nuclear ribonucleoprotein F
Low tissue specificity
Detected in all
SNU13
ENSSSCG00000000058
NHP2-like protein 1
Tissue enhanced
Detected in all
brain:
79.2
SNX14
ENSSSCG00000004293
ENSG00000135317
Sorting nexin 14
Low tissue specificity
Detected in all
SNX22
ENSSSCG00000037275
ENSG00000157734
Sorting nexin 22
Group enriched
Detected in many
brain:
30.6
lens:
8.0
male glands:
24.2
thyroid gland:
25.0
SNX6
ENSSSCG00000040912
ENSG00000129515
Sorting nexin-6
Low tissue specificity
Detected in all
SOAT1
ENSSSCG00000021464
ENSG00000057252
Sterol O-acyltransferase 1
Tissue enhanced
Detected in all
adrenal gland:
73.7
male glands:
49.9
testis:
31.6
SOD1
ENSSSCG00000021355
ENSG00000142168
Superoxide dismutase
Low tissue specificity
Detected in all
SOD2
ENSSSCG00000040317
ENSG00000112096,ENSG00000285441
Superoxide dismutase
Tissue enhanced
Detected in all
heart:
69.9
SOD3
ENSSSCG00000028814
ENSG00000109610
Superoxide dismutase 3
Tissue enhanced
Detected in many
cartilage:
162.0
ovary:
83.5
SORBS1
ENSSSCG00000010494
ENSG00000095637
Sorbin and SH3 domain containing 1
Tissue enhanced
Detected in all
smooth muscle:
127.1
SORCS1
ENSSSCG00000030026
ENSG00000108018
Sortilin related VPS10 domain containing receptor 1
Group enriched
Detected in many
ductus deferens:
55.7
vagus nerve:
78.5
SORD
ENSSSCG00000004679
ENSG00000140263
Sorbitol dehydrogenase
Group enriched
Detected in all
kidney:
31.3
liver:
83.6
male glands:
77.4
thyroid gland:
24.1
SOWAHB
ENSSSCG00000008985
ENSG00000186212
Sosondowah ankyrin repeat domain family member B
Tissue enhanced
Detected in many
stomach:
29.5
SOWAHD
ENSSSCG00000012618
ENSG00000187808
Sosondowah ankyrin repeat domain family member D
Tissue enhanced
Detected in many
male glands:
9.8
stomach:
14.9
SOX18
ENSSSCG00000037865
ENSG00000203883
SRY-box 18
Tissue enhanced
Detected in many
adipose tissue:
49.2
SOX2
ENSSSCG00000037485
ENSG00000181449
Transcription factor SOX-2
Tissue enhanced
Detected in some
brain:
34.9
lens:
38.2
upper respiratory system:
15.2
SOX5
ENSSSCG00000000567
ENSG00000134532
SRY-box 5
Tissue enhanced
Detected in many
cartilage:
117.7
SOX8
ENSSSCG00000037970
ENSG00000005513
SRY-box 8
Tissue enhanced
Detected in many
brain:
46.0
cartilage:
42.6
vagus nerve:
45.0
SP8
ENSSSCG00000031078
ENSG00000164651
Sp8 transcription factor
Group enriched
Detected in some
brain:
27.7
male glands:
31.4
upper respiratory system:
19.0
SPAG1
ENSSSCG00000027587
ENSG00000104450
Sperm associated antigen 1
Tissue enhanced
Detected in all
choroid plexus:
34.9
testis:
48.1
SPATA17
ENSSSCG00000029778
ENSG00000162814
Spermatogenesis-associated protein 17
Tissue enhanced
Detected in many
epididymis:
24.3
fallopian tube:
33.2
testis:
30.9
SPATA46
ENSSSCG00000006343
ENSG00000171722
Spermatogenesis associated 46
Tissue enhanced
Detected in many
cartilage:
34.1
male glands:
35.5
testis:
44.0
SPATS2L
ENSSSCG00000016090
ENSG00000196141
SPATS2-like protein
Tissue enhanced
Detected in all
thyroid gland:
99.1
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