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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SLC30A7
ENSSSCG00000006860
ENSG00000162695
Zinc transporter 7
Tissue enhanced
Detected in all
male glands:
48.2
SLC30A9
ENSSSCG00000008801
ENSG00000014824
Zinc transporter 9
Low tissue specificity
Detected in all
SLC34A3
ENSSSCG00000040105
ENSG00000198569
Solute carrier family 34 member 3
Tissue enriched
Detected in many
kidney:
76.1
SLC35A1
ENSSSCG00000004304
ENSG00000164414
Solute carrier family 35 member A1
Low tissue specificity
Detected in all
SLC35A2
ENSSSCG00000024841
ENSG00000102100
Solute carrier family 35 member A2
Low tissue specificity
Detected in all
SLC35B2
ENSSSCG00000001702
ENSG00000157593
Solute carrier family 35 member B2
Tissue enhanced
Detected in all
male glands:
37.0
SLC35C1
ENSSSCG00000025647
ENSG00000181830
GDP-fucose transporter 1
Tissue enhanced
Detected in all
male glands:
33.3
SLC35F2
ENSSSCG00000015001
ENSG00000110660
Solute carrier family 35 member F2
Low tissue specificity
Detected in all
SLC35F5
ENSSSCG00000015709
ENSG00000115084
Solute carrier family 35 member F5
Tissue enhanced
Detected in all
male glands:
50.8
SLC36A4
ENSSSCG00000024933
ENSG00000180773
Solute carrier family 36 member 4
Low tissue specificity
Detected in all
SLC38A1
ENSSSCG00000000807
ENSG00000111371
Solute carrier family 38 member 1
Tissue enhanced
Detected in many
male glands:
80.9
pineal gland:
84.3
retina:
71.6
SLC38A3
ENSSSCG00000011397
ENSG00000188338
Solute carrier family 38 member 3
Group enriched
Detected in many
choroid plexus:
43.4
liver:
136.6
retina:
56.5
SLC38A5
ENSSSCG00000025981
ENSG00000017483
Sodium-coupled neutral amino acid transporter 5
Tissue enhanced
Detected in all
lens:
33.0
SLC39A11
ENSSSCG00000037754
ENSG00000133195
Solute carrier family 39 member 11
Tissue enhanced
Detected in many
male glands:
53.7
SLC39A7
ENSSSCG00000001475
ENSG00000112473
Zinc transporter SLC39A7 precursor
Tissue enhanced
Detected in all
male glands:
99.4
SLC39A8
ENSSSCG00000009169
ENSG00000138821
Solute carrier family 39 member 8
Tissue enhanced
Detected in many
male glands:
64.5
mesothelial tissue:
55.2
upper respiratory system:
35.1
SLC3A1
ENSSSCG00000008449
ENSG00000138079
Neutral and basic amino acid transport protein rBAT
Tissue enhanced
Detected in many
gallbladder:
19.4
kidney:
43.3
male glands:
15.4
SLC40A1
ENSSSCG00000027157
ENSG00000138449
Solute carrier family 40 member 1
Tissue enhanced
Detected in many
bone marrow:
62.4
liver:
70.2
lymphoid tissue:
58.0
SLC41A1
ENSSSCG00000020783
ENSG00000133065
Solute carrier family 41 member 1
Tissue enhanced
Detected in all
choroid plexus:
49.1
heart:
105.7
male glands:
64.7
SLC41A2
ENSSSCG00000000838
ENSG00000136052
Solute carrier family 41 member 2
Tissue enhanced
Detected in all
male glands:
41.9
SLC44A4
ENSSSCG00000001419
ENSG00000204385
Choline transporter-like protein 4
Tissue enhanced
Detected in many
gallbladder:
43.4
large intestine:
70.7
stomach:
57.5
upper respiratory system:
59.4
SLC45A3
ENSSSCG00000026547
ENSG00000158715
Solute carrier family 45 member 3
Tissue enhanced
Detected in many
large intestine:
22.6
lymphoid tissue:
22.7
male glands:
19.5
stomach:
46.2
SLC46A3
ENSSSCG00000009322
ENSG00000139508
Solute carrier family 46 member 3 precursor
Tissue enhanced
Detected in all
breast:
40.8
liver:
45.6
salivary gland:
40.3
SLC4A8
ENSSSCG00000028060
ENSG00000050438
Solute carrier family 4 member 8
Tissue enhanced
Detected in many
epididymis:
34.9
male glands:
42.4
retina:
20.8
SLC50A1
ENSSSCG00000006529
ENSG00000169241
Solute carrier family 50 member 1
Tissue enhanced
Detected in all
male glands:
48.7
SLC52A3
ENSSSCG00000007199
ENSG00000101276
Solute carrier family 52 member 3
Tissue enhanced
Detected in all
male glands:
43.8
SLC5A1
ENSSSCG00000010036
ENSG00000100170
Sodium/glucose cotransporter 1
Tissue enhanced
Detected in many
ductus deferens:
32.3
gallbladder:
27.8
small intestine:
95.9
upper respiratory system:
37.0
SLC5A3
ENSSSCG00000034167
ENSG00000198743
Solute carrier family 5 member 3
Tissue enhanced
Detected in all
kidney:
63.8
male glands:
116.8
SLC5A8
ENSSSCG00000000871
ENSG00000256870
Sodium-coupled monocarboxylate transporter 1
Tissue enriched
Detected in all
male glands:
106.7
SLC6A14
ENSSSCG00000022372
ENSG00000268104
Solute carrier family 6 member 14
Tissue enhanced
Detected in some
esophagus:
16.5
gallbladder:
23.1
large intestine:
16.9
male glands:
12.2
salivary gland:
12.8
upper respiratory system:
22.5
SLC6A2
ENSSSCG00000002827
ENSG00000103546
Solute carrier family 6 member 2
Tissue enhanced
Detected in many
brain:
20.9
epididymis:
20.1
lung:
11.6
male glands:
23.6
SLC6A6
ENSSSCG00000011600
ENSG00000131389
Sodium- and chloride-dependent taurine transporter
Tissue enriched
Detected in many
retina:
86.0
SLC6A7
ENSSSCG00000014447
ENSG00000011083
Solute carrier family 6 member 7
Group enriched
Detected in many
brain:
24.8
male glands:
8.0
stomach:
25.2
SLC7A11
ENSSSCG00000022649
ENSG00000151012
Solute carrier family 7 member 11
Tissue enhanced
Detected in many
brain:
41.4
epididymis:
23.8
skin:
23.3
SLC7A4
ENSSSCG00000010102
ENSG00000099960
Cationic amino acid transporter 4
Tissue enhanced
Detected in many
choroid plexus:
25.7
male glands:
15.2
urinary bladder:
26.1
SLC7A8
ENSSSCG00000002032
ENSG00000092068
Solute carrier family 7 member 8
Tissue enhanced
Detected in many
cervix:
45.4
kidney:
72.3
SLC9A1
ENSSSCG00000003569
ENSG00000090020
Sodium/hydrogen exchanger 1
Tissue enhanced
Detected in many
salivary gland:
58.6
stomach:
67.9
SLC9A3
ENSSSCG00000039413
ENSG00000066230
Solute carrier family 9 member A3
Group enriched
Detected in some
gallbladder:
88.1
kidney:
22.6
large intestine:
50.9
male glands:
73.6
stomach:
40.8
SLC9A3R2
ENSSSCG00000008038
ENSG00000065054
Na(+)/H(+) exchange regulatory cofactor NHE-RF2
Low tissue specificity
Detected in all
SLC9C2
ENSSSCG00000015489
ENSG00000162753
Solute carrier family 9 member C2 (putative)
Tissue enhanced
Detected in many
epididymis:
16.9
testis:
34.2
SLCO2A1
ENSSSCG00000011641
ENSG00000174640
Solute carrier organic anion transporter family member 2A1
Low tissue specificity
Detected in many
SLCO4A1
ENSSSCG00000039419
ENSG00000101187
Solute carrier organic anion transporter family member 4A1
Tissue enhanced
Detected in many
epididymis:
59.5
male glands:
33.9
mesothelial tissue:
25.0
SLCO4C1
ENSSSCG00000014182
ENSG00000173930
Solute carrier organic anion transporter family member 4C1
Tissue enhanced
Detected in many
kidney:
24.7
salivary gland:
17.0
upper respiratory system:
13.8
SLFNL1
ENSSSCG00000003972
ENSG00000171790
Schlafen like 1
Tissue enhanced
Detected in many
testis:
42.8
SLIRP
ENSSSCG00000028167
ENSG00000119705
SRA stem-loop-interacting RNA-binding protein, mitochondrial
Tissue enhanced
Detected in all
lens:
62.0
SLIT3
ENSSSCG00000017012
ENSG00000184347
Slit guidance ligand 3
Tissue enhanced
Detected in many
lens:
68.2
penis:
66.1
SLU7
ENSSSCG00000017033
ENSG00000164609
SLU7 homolog, splicing factor
Low tissue specificity
Detected in all
SMAD4
ENSSSCG00000004524
ENSG00000141646
Mothers against decapentaplegic homolog 4
Low tissue specificity
Detected in all
SMAD6
ENSSSCG00000004948
ENSG00000137834
SMAD family member 6
Low tissue specificity
Detected in many
SMAD7
ENSSSCG00000004507
ENSG00000101665
Mothers against decapentaplegic homolog 7
Low tissue specificity
Detected in all
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