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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SIDT1
ENSSSCG00000024429
ENSG00000072858
SID1 transmembrane family member 1
Tissue enhanced
Detected in many
stomach:
25.8
SIGLEC15
ENSSSCG00000004493
ENSG00000197046
Sialic acid binding Ig like lectin 15
Tissue enhanced
Detected in all
dura mater:
21.5
SIM1
ENSSSCG00000004357
ENSG00000112246
Single-minded homolog 1
Tissue enhanced
Detected in some
epididymis:
8.6
kidney:
40.7
male glands:
12.0
SIM2
ENSSSCG00000027179
ENSG00000159263
Single-minded family bHLH transcription factor 2
Tissue enhanced
Detected in some
esophagus:
46.7
male glands:
42.5
stomach:
44.6
SIPA1
ENSSSCG00000012982
ENSG00000213445
Signal-induced proliferation-associated 1
Tissue enhanced
Detected in many
lymphoid tissue:
53.6
SIX1
ENSSSCG00000005087
ENSG00000126778
Homeobox protein SIX1
Tissue enhanced
Detected in many
pituitary gland:
39.5
salivary gland:
31.6
skeletal muscle:
47.3
SKAP1
ENSSSCG00000017527
ENSG00000141293
Src kinase associated phosphoprotein 1
Tissue enhanced
Detected in many
large intestine:
19.5
lymphoid tissue:
41.3
SKIDA1
ENSSSCG00000011087
ENSG00000180592
SKI/DACH domain containing 1
Tissue enhanced
Detected in all
skeletal muscle:
28.1
SLAIN1
ENSSSCG00000009475
ENSG00000139737
SLAIN motif family member 1
Tissue enriched
Detected in many
brain:
95.7
SLC10A1
ENSSSCG00000002313
ENSG00000100652
Solute carrier family 10 member 1
Tissue enriched
Detected in many
liver:
97.1
SLC10A6
ENSSSCG00000028952
ENSG00000145283
Solute carrier family 10 member 6
Tissue enhanced
Detected in many
mouth:
27.1
skin:
30.3
SLC10A7
ENSSSCG00000009035
ENSG00000120519
Sodium/bile acid cotransporter 7
Low tissue specificity
Detected in all
SLC12A2
ENSSSCG00000014255
ENSG00000064651
Solute carrier family 12 member 2
Tissue enriched
Detected in many
male glands:
217.5
SLC12A8
ENSSSCG00000011860
ENSG00000221955
Solute carrier family 12 member 8
Tissue enhanced
Detected in many
esophagus:
16.0
male glands:
38.3
salivary gland:
15.7
SLC14A1
ENSSSCG00000004492
ENSG00000141469
Solute carrier family 14 member 1 (Kidd blood group)
Tissue enhanced
Detected in all
brain:
34.6
kidney:
39.0
SLC16A1
ENSSSCG00000006771
ENSG00000155380
Monocarboxylate transporter 1
Tissue enhanced
Detected in many
large intestine:
76.4
SLC16A11
ENSSSCG00000017925
ENSG00000174326
Solute carrier family 16 member 11
Tissue enhanced
Detected in many
lung:
29.4
male glands:
32.1
thyroid gland:
34.2
upper respiratory system:
45.3
SLC16A7
ENSSSCG00000000456
ENSG00000118596
Solute carrier family 16 member 7
Tissue enhanced
Detected in many
heart:
60.6
SLC17A5
ENSSSCG00000004486
ENSG00000119899
Solute carrier family 17 member 5
Low tissue specificity
Detected in all
SLC18A2
ENSSSCG00000020671
ENSG00000165646
Synaptic vesicular amine transporter
Tissue enriched
Detected in many
brain:
65.9
SLC19A1
ENSSSCG00000030696
ENSG00000173638
Solute carrier family 19 member 1
Tissue enhanced
Detected in all
male glands:
40.0
SLC1A2
ENSSSCG00000013296
ENSG00000110436
Solute carrier family 1 member 2
Tissue enriched
Detected in some
brain:
89.6
SLC1A5
ENSSSCG00000003105
ENSG00000105281
Solute carrier family 1 member 5
Tissue enhanced
Detected in many
male glands:
70.1
SLC22A13
ENSSSCG00000011256
ENSG00000172940
Solute carrier family 22 member 13
Low tissue specificity
Detected in all
SLC22A14
ENSSSCG00000011255
ENSG00000144671
Solute carrier family 22 member 14
Tissue enriched
Detected in many
testis:
27.2
SLC22A16
ENSSSCG00000004399
ENSG00000004809
Solute carrier family 22 member 16
Tissue enhanced
Detected in all
male glands:
27.6
SLC22A4
ENSSSCG00000014275
ENSG00000197208
Solute carrier family 22 member 4
Tissue enhanced
Detected in many
male glands:
34.2
SLC23A1
ENSSSCG00000026423
ENSG00000170482
Solute carrier family 23 member 1
Tissue enhanced
Detected in many
kidney:
50.6
male glands:
31.0
SLC24A3
ENSSSCG00000007100
ENSG00000185052
Solute carrier family 24 member 3
Tissue enhanced
Detected in many
brain:
52.7
SLC25A11
ENSSSCG00000032472
ENSG00000108528
Solute carrier family 25 member 11
Tissue enhanced
Detected in many
skeletal muscle:
37.3
SLC25A17
ENSSSCG00000000072
ENSG00000100372
Solute carrier family 25 member 17
Low tissue specificity
Detected in all
SLC25A20
ENSSSCG00000011366
ENSG00000178537
Solute carrier family 25 member 20
Low tissue specificity
Detected in all
SLC25A26
ENSSSCG00000011498
ENSG00000144741
Solute carrier family 25 member 26
Tissue enhanced
Detected in all
male glands:
38.8
SLC25A29
ENSSSCG00000002520
ENSG00000197119
Solute carrier family 25 member 29
Low tissue specificity
Detected in all
SLC25A35
ENSSSCG00000022395
ENSG00000125434
Solute carrier family 25 member 35
Tissue enriched
Detected in many
pineal gland:
87.6
SLC25A4
ENSSSCG00000015790
ENSG00000151729
Solute carrier family 25 member 4
Group enriched
Detected in all
heart:
222.5
skeletal muscle:
196.1
SLC25A47
ENSSSCG00000002515
ENSG00000140107
Solute carrier family 25 member 47
Tissue enriched
Detected in some
liver:
83.0
SLC26A1
ENSSSCG00000035739
ENSG00000145217
Solute carrier family 26 member 1
Group enriched
Detected in many
kidney:
55.9
liver:
48.3
SLC26A3
ENSSSCG00000021813
ENSG00000091138
Chloride anion exchanger
Group enriched
Detected in some
gallbladder:
26.5
large intestine:
96.4
male glands:
74.9
small intestine:
26.5
SLC26A7
ENSSSCG00000006116
ENSG00000147606
Solute carrier family 26 member 7
Tissue enhanced
Detected in many
kidney:
46.2
male glands:
25.2
thyroid gland:
79.4
SLC27A6
ENSSSCG00000014257
ENSG00000113396
Solute carrier family 27 member 6
Tissue enhanced
Detected in many
choroid plexus:
22.6
kidney:
34.9
SLC28A3
ENSSSCG00000010960
ENSG00000197506
Solute carrier family 28 member 3
Tissue enriched
Detected in some
male glands:
65.7
SLC2A12
ENSSSCG00000004172
ENSG00000146411
Solute carrier family 2 member 12
Tissue enriched
Detected in many
choroid plexus:
143.9
SLC2A13
ENSSSCG00000000783
ENSG00000151229
Solute carrier family 2 member 13
Tissue enhanced
Detected in many
brain:
24.0
SLC2A8
ENSSSCG00000005610
ENSG00000136856
Solute carrier family 2 member 8
Tissue enhanced
Detected in all
epididymis:
25.8
testis:
28.2
SLC30A2
ENSSSCG00000026386
ENSG00000158014
Zinc transporter 2
Tissue enriched
Detected in some
male glands:
158.7
SLC30A3
ENSSSCG00000021534
ENSG00000115194
Zinc transporter 3
Tissue enhanced
Detected in many
brain:
33.7
thyroid gland:
93.7
SLC30A4
ENSSSCG00000004668
ENSG00000104154
Zinc transporter 4
Low tissue specificity
Detected in many
SLC30A5
ENSSSCG00000022430
ENSG00000145740
Zinc transporter 5
Tissue enhanced
Detected in all
ovary:
64.6
SLC30A6
ENSSSCG00000008518
ENSG00000152683
Zinc transporter 6
Low tissue specificity
Detected in all
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