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Human disease related genes
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UMAP gene cluster
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Subclass
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Biological process
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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SELENOS
ENSSSCG00000004826
ENSG00000131871
Selenoprotein S
Tissue enhanced
Detected in all
male glands:
79.1
SELENOT
ENSSSCG00000036920
Selenoprotein T precursor
Low tissue specificity
Detected in all
SELENOW
ENSSSCG00000034313
ENSG00000178980
Selenoprotein W
Tissue enhanced
Detected in all
brain:
189.9
choroid plexus:
178.7
lens:
371.9
pineal gland:
187.7
SEMA3B
ENSSSCG00000011400
ENSG00000012171
Semaphorin 3B
Tissue enhanced
Detected in many
vagus nerve:
112.4
SEMA3F
ENSSSCG00000011398
ENSG00000001617
Semaphorin 3F
Tissue enhanced
Detected in many
mesothelial tissue:
41.2
SEMA4G
ENSSSCG00000029533
ENSG00000095539
Semaphorin 4G
Tissue enhanced
Detected in all
liver:
79.5
stomach:
30.8
SEMA6B
ENSSSCG00000035176
ENSG00000167680
Semaphorin 6B
Low tissue specificity
Detected in all
SENP8
ENSSSCG00000025616
ENSG00000166192
SUMO/sentrin peptidase family member, NEDD8 specific
Low tissue specificity
Detected in all
SEPT7
ENSSSCG00000016661
ENSG00000122545
Septin 7
Tissue enhanced
Detected in all
brain:
111.0
SERINC1
ENSSSCG00000004237
ENSG00000111897
Serine incorporator 1
Low tissue specificity
Detected in all
SERP1
ENSSSCG00000037465
ENSG00000120742
Stress-associated endoplasmic reticulum protein 1
Tissue enhanced
Detected in all
male glands:
103.7
salivary gland:
71.0
SERPINA1
ENSSSCG00000002476
ENSG00000197249
Alpha-1-antitrypsin precursor
Tissue enhanced
Detected in many
cartilage:
61.3
gallbladder:
123.2
liver:
272.0
SERPINA11
ENSSSCG00000002479
ENSG00000186910
Serpin family A member 11
Tissue enriched
Detected in some
liver:
78.2
SERPINA6
ENSSSCG00000002475
ENSG00000170099
Corticosteroid-binding globulin precursor
Tissue enriched
Detected in some
liver:
79.4
SERPINB1
ENSSSCG00000001011
ENSG00000021355
Serpin family B member 1
Tissue enriched
Detected in many
lens:
240.5
SERPINB6
ENSSSCG00000038404
ENSG00000124570
Serpin family B member 6
Group enriched
Detected in all
lens:
176.6
male glands:
47.4
SERPINB9
ENSSSCG00000031615
ENSG00000170542
Serpin B9
Tissue enhanced
Detected in many
lymphoid tissue:
43.9
SERPIND1
ENSSSCG00000010093
ENSG00000099937
Serpin family D member 1
Tissue enriched
Detected in some
liver:
171.8
SESN3
ENSSSCG00000037015
ENSG00000149212
Sestrin 3
Tissue enriched
Detected in all
lens:
145.8
SETD1B
ENSSSCG00000009806
ENSG00000139718
SET domain containing 1B
Low tissue specificity
Detected in all
SETD7
ENSSSCG00000030396
ENSG00000145391
SET domain containing lysine methyltransferase 7
Low tissue specificity
Detected in all
SFMBT1
ENSSSCG00000011454
ENSG00000163935
Scm like with four mbt domains 1
Low tissue specificity
Detected in all
SFRP1
ENSSSCG00000025822
ENSG00000104332
Secreted frizzled related protein 1
Tissue enhanced
Detected in many
choroid plexus:
166.0
SFT2D1
ENSSSCG00000004020
ENSG00000198818
Vesicle transport protein SFT2A
Low tissue specificity
Detected in all
SFT2D3
ENSSSCG00000015860
ENSG00000173349
SFT2 domain containing 3
Low tissue specificity
Detected in all
SGK1
ENSSSCG00000021443
ENSG00000118515
Serine/threonine-protein kinase Sgk1
Tissue enhanced
Detected in all
choroid plexus:
79.9
SGPL1
ENSSSCG00000010274
ENSG00000166224
Sphingosine-1-phosphate lyase 1
Low tissue specificity
Detected in all
SGPP1
ENSSSCG00000028558
ENSG00000126821
Sphingosine-1-phosphate phosphatase 1
Low tissue specificity
Detected in all
SGPP2
ENSSSCG00000025993
ENSG00000163082
Sphingosine-1-phosphate phosphatase 2
Tissue enhanced
Detected in many
male glands:
53.4
SGSH
ENSSSCG00000017152
ENSG00000181523
N-sulfoglucosamine sulfohydrolase
Low tissue specificity
Detected in all
SGSM1
ENSSSCG00000009951
ENSG00000167037
Small G protein signaling modulator 1
Tissue enhanced
Detected in all
brain:
33.8
stomach:
33.6
SH2D1B
ENSSSCG00000032108
ENSG00000198574
SH2 domain containing 1B
Tissue enhanced
Detected in all
male glands:
29.3
SH3BGRL
ENSSSCG00000012452
ENSG00000131171
SH3 domain binding glutamate rich protein like
Low tissue specificity
Detected in all
SH3BGRL2
ENSSSCG00000032015
ENSG00000198478
SH3 domain binding glutamate rich protein like 2
Tissue enhanced
Detected in many
large intestine:
64.3
lens:
119.2
SH3BGRL3
ENSSSCG00000034937
ENSG00000142669
SH3 domain binding glutamate rich protein like 3
Low tissue specificity
Detected in all
SH3BP2
ENSSSCG00000022004
ENSG00000087266
SH3 domain binding protein 2
Low tissue specificity
Detected in many
SH3BP5
ENSSSCG00000024938
ENSG00000131370
SH3 domain binding protein 5
Low tissue specificity
Detected in all
SH3GL2
ENSSSCG00000005177
ENSG00000107295
SH3 domain containing GRB2 like 2, endophilin A1
Tissue enhanced
Detected in many
brain:
55.7
pineal gland:
47.4
retina:
29.4
SH3KBP1
ENSSSCG00000012160
ENSG00000147010
SH3 domain containing kinase binding protein 1
Tissue enhanced
Detected in all
lymphoid tissue:
54.5
SH3RF1
ENSSSCG00000009716
ENSG00000154447
SH3 domain containing ring finger 1
Tissue enhanced
Detected in all
cartilage:
85.0
SH3RF2
ENSSSCG00000014410
ENSG00000156463
SH3 domain containing ring finger 2
Tissue enhanced
Detected in many
skin:
72.0
SHANK2
ENSSSCG00000033043
ENSG00000162105
SH3 and multiple ankyrin repeat domains 2
Tissue enhanced
Detected in many
male glands:
66.4
salivary gland:
69.2
SHC3
ENSSSCG00000039841
ENSG00000148082
SHC adaptor protein 3
Tissue enhanced
Detected in many
brain:
28.0
SHE
ENSSSCG00000006547
ENSG00000169291
Src homology 2 domain containing E
Low tissue specificity
Detected in many
SHISA2
ENSSSCG00000030113
ENSG00000180730
Shisa family member 2
Tissue enhanced
Detected in many
cartilage:
90.7
male glands:
23.3
skeletal muscle:
26.0
SHISA4
ENSSSCG00000031981
ENSG00000198892
Shisa family member 4
Tissue enhanced
Detected in many
brain:
43.2
skeletal muscle:
124.2
SHMT2
ENSSSCG00000037077
ENSG00000182199
Serine hydroxymethyltransferase 2
Tissue enhanced
Detected in all
cartilage:
56.8
SHROOM3
ENSSSCG00000008984
ENSG00000138771
Shroom family member 3
Tissue enhanced
Detected in many
ductus deferens:
63.6
salivary gland:
51.6
stomach:
71.7
SHROOM4
ENSSSCG00000012309
ENSG00000158352
Shroom family member 4
Low tissue specificity
Detected in many
SHTN1
ENSSSCG00000010665
ENSG00000187164
Shootin 1
Tissue enhanced
Detected in many
brain:
83.8
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