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Chromosome
1
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8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
S100A13
ENSSSCG00000038991
ENSG00000189171
S100 calcium binding protein A13
Tissue enriched
Detected in all
male glands:
118.5
S100A14
ENSSSCG00000006582
ENSG00000189334
Protein S100-A14
Tissue enhanced
Detected in many
brain:
42.6
cornea:
41.1
mouth:
54.2
stomach:
44.6
S100A2
ENSSSCG00000006580
ENSG00000196754
S100 calcium binding protein A2
Tissue enhanced
Detected in many
mouth:
105.0
skin:
69.0
S100A4
ENSSSCG00000006578
ENSG00000196154
Protein S100-A4
Tissue enriched
Detected in many
lens:
255.7
S100A6
ENSSSCG00000021084
ENSG00000197956
Protein S100-A6
Tissue enhanced
Detected in many
cornea:
159.7
lens:
261.3
SACS
ENSSSCG00000035493
ENSG00000151835
Sacsin molecular chaperone
Tissue enhanced
Detected in all
brain:
25.8
SALL3
ENSSSCG00000004858
ENSG00000256463
Spalt like transcription factor 3
Tissue enhanced
Detected in some
brain:
14.0
heart:
12.0
male glands:
55.2
SALL4
ENSSSCG00000007479
ENSG00000101115
Sal-like protein 4
Tissue enhanced
Detected in all
male glands:
19.1
SAMD10
ENSSSCG00000034186
ENSG00000130590
Sterile alpha motif domain containing 10
Tissue enhanced
Detected in many
male glands:
24.0
SAMD11
ENSSSCG00000033509
ENSG00000187634
Sterile alpha motif domain containing 11
Tissue enriched
Detected in many
retina:
108.3
SAMD12
ENSSSCG00000036553
ENSG00000177570
Sterile alpha motif domain containing 12
Tissue enhanced
Detected in many
brain:
27.0
SAMD4A
ENSSSCG00000023408
ENSG00000020577
Sterile alpha motif domain containing 4A
Tissue enhanced
Detected in many
testis:
79.6
SAMD5
ENSSSCG00000004112
ENSG00000203727
Sterile alpha motif domain containing 5
Tissue enhanced
Detected in many
vagus nerve:
47.2
SAMD8
ENSSSCG00000010319
ENSG00000156671
Sterile alpha motif domain containing 8
Low tissue specificity
Detected in all
SAMHD1
ENSSSCG00000027806
ENSG00000101347
Deoxynucleoside triphosphate triphosphohydrolase SAMHD1
Tissue enhanced
Detected in all
male glands:
89.0
SAR1A
ENSSSCG00000010260
ENSG00000079332
GTP-binding protein SAR1a
Tissue enhanced
Detected in all
male glands:
82.8
SARAF
ENSSSCG00000033402
ENSG00000133872
Store-operated calcium entry associated regulatory factor
Tissue enhanced
Detected in all
male glands:
57.9
SARDH
ENSSSCG00000005740
ENSG00000123453
Sarcosine dehydrogenase, mitochondrial
Group enriched
Detected in many
kidney:
47.3
liver:
73.6
SATB1
ENSSSCG00000011201
ENSG00000182568
SATB homeobox 1
Tissue enriched
Detected in many
lymphoid tissue:
199.2
SBDS
ENSSSCG00000007732
ENSG00000126524
Ribosome maturation protein SBDS
Tissue enhanced
Detected in all
lens:
115.3
SBK2
ENSSSCG00000033532
ENSG00000187550
SH3 domain binding kinase family member 2
Tissue enhanced
Detected in many
heart:
32.6
mouth:
24.9
skeletal muscle:
33.9
SC5D
ENSSSCG00000028517
ENSG00000109929
Sterol-C5-desaturase
Tissue enhanced
Detected in all
brain:
42.8
liver:
49.5
male glands:
37.0
SCAMP1
ENSSSCG00000034795
ENSG00000085365
Secretory carrier-associated membrane protein 1
Tissue enhanced
Detected in all
pineal gland:
37.8
SCARA3
ENSSSCG00000020846
ENSG00000168077
Scavenger receptor class A member 3
Tissue enhanced
Detected in many
cartilage:
133.2
penis:
53.5
SCARF1
ENSSSCG00000024071
ENSG00000074660
Scavenger receptor class F member 1
Low tissue specificity
Detected in many
SCD
ENSSSCG00000010554
ENSG00000099194
Acyl-CoA desaturase
Tissue enhanced
Detected in many
adipose tissue:
174.7
aorta:
147.9
bone marrow:
192.1
SCD5
ENSSSCG00000009245
ENSG00000145284
Stearoyl-CoA desaturase 5
Tissue enhanced
Detected in many
brain:
40.2
SCFD1
ENSSSCG00000001973
ENSG00000092108
Sec1 family domain containing 1
Low tissue specificity
Detected in all
SCG2
ENSSSCG00000023032
ENSG00000171951
Secretogranin-2 precursor
Group enriched
Detected in some
pineal gland:
170.0
pituitary gland:
272.9
SCIN
ENSSSCG00000015353
ENSG00000006747
Adseverin
Tissue enhanced
Detected in many
kidney:
43.1
male glands:
34.2
SCML2
ENSSSCG00000012155
ENSG00000102098
Scm polycomb group protein like 2
Tissue enhanced
Detected in all
testis:
26.0
SCN1B
ENSSSCG00000023267
ENSG00000105711
Sodium voltage-gated channel beta subunit 1
Group enriched
Detected in many
brain:
99.0
skeletal muscle:
52.5
SCNN1A
ENSSSCG00000000707
ENSG00000111319
Amiloride-sensitive sodium channel subunit alpha
Tissue enhanced
Detected in many
kidney:
33.8
male glands:
40.2
stomach:
37.7
SCRN1
ENSSSCG00000016684
ENSG00000136193
Secernin 1
Tissue enhanced
Detected in many
brain:
44.6
epididymis:
22.9
lens:
29.3
pineal gland:
20.8
retina:
22.6
SDC2
ENSSSCG00000006088
ENSG00000169439
Syndecan-2 precursor
Tissue enhanced
Detected in all
cornea:
91.0
liver:
65.9
SDC3
ENSSSCG00000003592
ENSG00000162512
Syndecan 3
Tissue enhanced
Detected in all
brain:
64.9
cartilage:
42.7
SDCBP
ENSSSCG00000006237
ENSG00000137575
Syntenin-1 CG9291-PB
Low tissue specificity
Detected in all
SDCBP2
ENSSSCG00000007189
ENSG00000125775
Syntenin-2
Tissue enhanced
Detected in many
endometrium:
20.0
gallbladder:
34.5
large intestine:
20.9
SDF2
ENSSSCG00000017772
ENSG00000132581
Stromal cell derived factor 2
Low tissue specificity
Detected in all
SDHD
ENSSSCG00000015034
Succinate dehydrogenase
Low tissue specificity
Detected in all
SDK1
ENSSSCG00000007574
ENSG00000146555
Sidekick cell adhesion molecule 1
Tissue enhanced
Detected in many
lens:
57.1
SEC11A
ENSSSCG00000029183
ENSG00000140612
SEC11 homolog A, signal peptidase complex subunit
Low tissue specificity
Detected in all
SEC13
ENSSSCG00000011572
ENSG00000157020
SEC13 homolog, nuclear pore and COPII coat complex component
Low tissue specificity
Detected in all
SEC14L5
ENSSSCG00000007926
ENSG00000103184
SEC14 like lipid binding 5
Tissue enhanced
Detected in many
brain:
37.6
SEC24A
ENSSSCG00000014304
ENSG00000113615
Protein transport protein Sec24A
Tissue enhanced
Detected in all
male glands:
76.8
SEC24D
ENSSSCG00000009112
ENSG00000150961
SEC24 homolog D, COPII coat complex component
Low tissue specificity
Detected in all
SEC61B
ENSSSCG00000038914
ENSG00000106803
Protein transport protein Sec61 subunit beta
Tissue enhanced
Detected in all
male glands:
129.3
SEC62
ENSSSCG00000029608
ENSG00000008952
Translocation protein SEC62
Tissue enhanced
Detected in all
lens:
60.7
male glands:
57.5
SELENOF
ENSSSCG00000030125
ENSG00000183291
Selenoprotein F
Tissue enhanced
Detected in all
male glands:
86.0
SELENOM
ENSSSCG00000029781
ENSG00000198832
Selenoprotein M precursor
Tissue enhanced
Detected in many
ovary:
102.6
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