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Human disease related genes
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Keyword
Chromosome
1
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8
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PTPRG
ENSSSCG00000011485
ENSG00000144724
Protein tyrosine phosphatase, receptor type G
Low tissue specificity
Detected in all
PTPRM
ENSSSCG00000028805
ENSG00000173482
Protein tyrosine phosphatase, receptor type M
Low tissue specificity
Detected in all
PTRH2
ENSSSCG00000017667
ENSG00000141378
Peptidyl-tRNA hydrolase 2
Tissue enhanced
Detected in many
lens:
16.3
PTX4
ENSSSCG00000037262
ENSG00000251692
Pentraxin 4
Tissue enhanced
Detected in all
epididymis:
51.3
male glands:
34.0
PUS3
ENSSSCG00000015222
ENSG00000110060
TRNA pseudouridine(38/39) synthase
Low tissue specificity
Detected in all
PXDC1
ENSSSCG00000025582
ENSG00000168994
PX domain containing 1
Low tissue specificity
Detected in all
PXT1
ENSSSCG00000036420
ENSG00000179165
Peroxisomal, testis specific 1
Tissue enhanced
Detected in many
male glands:
22.1
PXYLP1
ENSSSCG00000011670
ENSG00000155893
2-phosphoxylose phosphatase 1
Tissue enriched
Detected in all
cartilage:
103.9
PYCR1
ENSSSCG00000034723
ENSG00000183010
Pyrroline-5-carboxylate reductase 1
Tissue enhanced
Detected in all
cartilage:
48.7
male glands:
82.7
salivary gland:
47.5
PYGL
ENSSSCG00000005024
ENSG00000100504
Glycogen phosphorylase, liver form
Tissue enhanced
Detected in all
cornea:
96.8
PYGO1
ENSSSCG00000004607
ENSG00000171016
Pygopus family PHD finger 1
Tissue enhanced
Detected in all
skeletal muscle:
55.6
QRFP
ENSSSCG00000005705
ENSG00000188710
Pyroglutamylated RFamide peptide
Tissue enhanced
Detected in all
cervix:
37.5
QSOX1
ENSSSCG00000015535
ENSG00000116260
Quiescin sulfhydryl oxidase 1
Tissue enhanced
Detected in all
liver:
66.8
male glands:
91.5
stomach:
77.5
RAB11A
ENSSSCG00000032312
ENSG00000103769
Ras-related protein Rab-11A
Low tissue specificity
Detected in all
RAB13
ENSSSCG00000006564
ENSG00000143545
RAB13, member RAS oncogene family
Low tissue specificity
Detected in all
RAB1A
ENSSSCG00000008359
ENSG00000138069
Ras-related protein Rab-1A
Low tissue specificity
Detected in all
RAB20
ENSSSCG00000022719
ENSG00000139832
RAB20, member RAS oncogene family
Tissue enhanced
Detected in many
heart:
26.5
RAB27A
ENSSSCG00000004612
ENSG00000069974
Ras-related protein Rab-27A
Tissue enhanced
Detected in all
pituitary gland:
55.5
RAB27B
ENSSSCG00000035243
ENSG00000041353
RAB27B, member RAS oncogene family
Tissue enhanced
Detected in many
male glands:
114.3
salivary gland:
34.9
RAB2A
ENSSSCG00000006232
ENSG00000104388
RAB2A, member RAS oncogene family
Low tissue specificity
Detected in all
RAB2B
ENSSSCG00000029544
ENSG00000129472
RAB2B, member RAS oncogene family
Low tissue specificity
Detected in all
RAB3D
ENSSSCG00000016928
ENSG00000105514
RAB3D, member RAS oncogene family
Low tissue specificity
Detected in many
RAB5A
ENSSSCG00000037653
ENSG00000144566
Ras-related protein Rab-5A
Low tissue specificity
Detected in all
RAB6B
ENSSSCG00000036503
ENSG00000154917
RAB6B, member RAS oncogene family
Tissue enriched
Detected in many
brain:
57.2
RABAC1
ENSSSCG00000003046
ENSG00000105404
Prenylated Rab acceptor protein 1
Tissue enhanced
Detected in all
male glands:
138.7
RAI1
ENSSSCG00000038164
ENSG00000108557
Retinoic acid induced 1
Low tissue specificity
Detected in all
RALGAPB
ENSSSCG00000007345
ENSG00000170471
Ral GTPase activating protein non-catalytic beta subunit
Tissue enhanced
Detected in all
male glands:
77.9
RAMP1
ENSSSCG00000016331
ENSG00000132329
Receptor activity-modifying protein 1
Tissue enhanced
Detected in many
heart:
145.3
skeletal muscle:
82.5
RANBP6
ENSSSCG00000005204
ENSG00000137040
RAN binding protein 6
Low tissue specificity
Detected in all
RANGRF
ENSSSCG00000038726
ENSG00000108961
Ran guanine nucleotide release factor isoform 2
Tissue enhanced
Detected in all
pineal gland:
20.3
testis:
20.5
RAP1B
ENSSSCG00000032595
ENSG00000127314
RAP1B, member of RAS oncogene family
Low tissue specificity
Detected in all
RAP1GAP
ENSSSCG00000022029
ENSG00000076864
RAP1 GTPase activating protein
Tissue enhanced
Detected in many
brain:
81.1
male glands:
31.9
salivary gland:
29.6
RAP1GAP2
ENSSSCG00000034858
ENSG00000132359
RAP1 GTPase activating protein 2
Tissue enhanced
Detected in many
brain:
34.0
RAP2A
ENSSSCG00000039812
ENSG00000125249
RAP2A, member of RAS oncogene family
Tissue enhanced
Detected in all
brain:
36.8
RAPGEF4
ENSSSCG00000015959
ENSG00000091428
Rap guanine nucleotide exchange factor 4
Tissue enhanced
Detected in many
adrenal gland:
41.6
brain:
35.4
RASAL1
ENSSSCG00000009874
ENSG00000111344
RAS protein activator like 1
Tissue enhanced
Detected in many
adrenal gland:
30.1
salivary gland:
46.4
RASD1
ENSSSCG00000034044
ENSG00000108551
Ras related dexamethasone induced 1
Tissue enhanced
Detected in all
epididymis:
28.4
male glands:
47.4
RASEF
ENSSSCG00000040707
ENSG00000165105
RAS and EF-hand domain containing
Tissue enhanced
Detected in many
male glands:
54.7
salivary gland:
27.2
stomach:
53.9
RASL10B
ENSSSCG00000036746
ENSG00000270885
RAS like family 10 member B
Tissue enhanced
Detected in many
brain:
32.6
heart:
23.2
RASL11B
ENSSSCG00000008835
ENSG00000128045
RAS like family 11 member B
Tissue enhanced
Detected in all
cartilage:
59.1
RASL12
ENSSSCG00000038071
ENSG00000103710
RAS like family 12
Tissue enhanced
Detected in many
cervix:
37.1
smooth muscle:
38.1
RASSF10
ENSSSCG00000022060
ENSG00000189431
Ras association domain family member 10
Tissue enhanced
Detected in many
male glands:
27.2
RASSF5
ENSSSCG00000031970
ENSG00000266094
Ras association domain family member 5
Tissue enhanced
Detected in many
lymphoid tissue:
46.0
salivary gland:
33.0
RBBP4
ENSSSCG00000028423
ENSG00000162521
RB binding protein 4, chromatin remodeling factor
Low tissue specificity
Detected in all
RBBP9
ENSSSCG00000029494
ENSG00000089050
RB binding protein 9, serine hydrolase
Tissue enhanced
Detected in all
choroid plexus:
40.2
RBP4
ENSSSCG00000010479
ENSG00000138207
Retinol-binding protein 4 precursor
Group enriched
Detected in all
liver:
245.2
pineal gland:
94.9
RBP5
ENSSSCG00000039512
ENSG00000139194
Retinol-binding protein 5
Group enriched
Detected in all
kidney:
79.5
liver:
41.6
RBPMS
ENSSSCG00000015846
ENSG00000157110
RNA binding protein, mRNA processing factor
Tissue enhanced
Detected in many
smooth muscle:
125.5
RBPMS2
ENSSSCG00000004549
ENSG00000166831
RNA binding protein, mRNA processing factor 2
Tissue enhanced
Detected in many
smooth muscle:
91.8
urinary bladder:
45.2
RBX1
ENSSSCG00000034230
ENSG00000100387
Ring-box 1
Tissue enhanced
Detected in all
brain:
57.6
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