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Human disease related genes
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
RCBTB1
ENSSSCG00000021060
ENSG00000136144
RCC1 and BTB domain containing protein 1
Tissue enhanced
Detected in all
male glands:
55.0
RCVRN
ENSSSCG00000037991
ENSG00000109047
Recoverin
Group enriched
Detected in some
pineal gland:
139.1
retina:
128.1
RDH11
ENSSSCG00000002296
ENSG00000072042
Retinol dehydrogenase 11 (all-trans/9-cis/11-cis)
Tissue enhanced
Detected in all
adrenal gland:
57.8
ovary:
62.2
testis:
122.1
RDH12
ENSSSCG00000002297
ENSG00000139988
Retinol dehydrogenase 12 precursor
Tissue enriched
Detected in some
testis:
191.0
REEP5
ENSSSCG00000022048
ENSG00000129625
Receptor accessory protein 5
Tissue enhanced
Detected in all
male glands:
120.6
RELL1
ENSSSCG00000008772
ENSG00000181826
RELT like 1
Tissue enhanced
Detected in all
male glands:
82.5
RER1
ENSSSCG00000026626
ENSG00000157916
Retention in endoplasmic reticulum sorting receptor 1
Low tissue specificity
Detected in all
RERE
ENSSSCG00000033497
ENSG00000142599
Arginine-glutamic acid dipeptide repeats
Low tissue specificity
Detected in all
RERGL
ENSSSCG00000040822
ENSG00000111404
RERG like
Tissue enhanced
Detected in many
salivary gland:
19.0
RETREG1
ENSSSCG00000016792
ENSG00000154153
Reticulophagy regulator 1
Low tissue specificity
Detected in all
REXO2
ENSSSCG00000015056
ENSG00000076043
RNA exonuclease 2
Tissue enhanced
Detected in all
ovary:
85.5
RFESD
ENSSSCG00000014141
ENSG00000175449
Rieske Fe-S domain containing
Tissue enhanced
Detected in all
lens:
38.8
RFK
ENSSSCG00000037277
ENSG00000135002
Riboflavin kinase
Tissue enhanced
Detected in all
male glands:
81.3
RFLNA
ENSSSCG00000035760
ENSG00000178882
Refilin A
Tissue enhanced
Detected in many
ovary:
45.6
stomach:
91.4
RFX1
ENSSSCG00000013764
ENSG00000132005
Regulatory factor X1
Low tissue specificity
Detected in all
RFX3
ENSSSCG00000005225
ENSG00000080298
Regulatory factor X3
Tissue enhanced
Detected in all
brain:
40.2
RGS4
ENSSSCG00000006335
ENSG00000117152
Regulator of G-protein signaling 4
Group enriched
Detected in many
brain:
76.6
male glands:
55.6
RGS6
ENSSSCG00000033093
ENSG00000182732
Regulator of G protein signaling 6
Tissue enhanced
Detected in many
brain:
18.1
heart:
15.1
male glands:
31.5
RGS7
ENSSSCG00000010840
ENSG00000182901
Regulator of G protein signaling 7
Tissue enhanced
Detected in many
brain:
50.3
RGS9BP
ENSSSCG00000021479
ENSG00000186326
Regulator of G protein signaling 9 binding protein
Tissue enhanced
Detected in some
kidney:
13.3
retina:
48.1
RHOBTB1
ENSSSCG00000028327
ENSG00000072422
Rho related BTB domain containing 1
Tissue enhanced
Detected in all
kidney:
43.5
male glands:
60.1
RHOBTB2
ENSSSCG00000009638
ENSG00000008853
Rho related BTB domain containing 2
Tissue enhanced
Detected in all
kidney:
56.7
RHOC
ENSSSCG00000006777
ENSG00000155366
Ras homolog family member C
Low tissue specificity
Detected in all
RHOG
ENSSSCG00000039656
ENSG00000177105
Rho-related GTP-binding protein RhoG
Tissue enhanced
Detected in many
lens:
158.9
RHOQ
ENSSSCG00000031261
ENSG00000119729
Ras homolog family member Q
Low tissue specificity
Detected in all
RHOV
ENSSSCG00000004758
ENSG00000104140
Rho-related GTP-binding protein RhoV
Tissue enhanced
Detected in many
cornea:
15.0
male glands:
40.4
RHPN2
ENSSSCG00000022312
ENSG00000131941
Rhophilin Rho GTPase binding protein 2
Tissue enhanced
Detected in many
male glands:
38.5
RIIAD1
ENSSSCG00000040872
ENSG00000178796
RIIa domain-containing protein 1
Tissue enhanced
Detected in many
choroid plexus:
19.5
pineal gland:
24.8
testis:
27.2
RIMBP2
ENSSSCG00000009748
ENSG00000060709
RIMS binding protein 2
Tissue enhanced
Detected in many
brain:
22.5
liver:
17.7
pituitary gland:
17.7
retina:
14.6
RIPOR3
ENSSSCG00000007470
ENSG00000042062
RIPOR family member 3
Tissue enhanced
Detected in many
epididymis:
21.1
RNASE13
ENSSSCG00000023519
ENSG00000206150
Ribonuclease A family member 13 (inactive)
Tissue enriched
Detected in some
epididymis:
83.0
RNF128
ENSSSCG00000012551
ENSG00000133135
Ring finger protein 128, E3 ubiquitin protein ligase
Tissue enhanced
Detected in many
brain:
45.6
pineal gland:
28.0
RNF13
ENSSSCG00000027459
ENSG00000082996
Ring finger protein 13
Tissue enhanced
Detected in all
brain:
76.9
RNF141
ENSSSCG00000036546
ENSG00000110315
RING finger protein 141
Tissue enhanced
Detected in all
lens:
62.1
RNF146
ENSSSCG00000004217
ENSG00000118518
Ring finger protein 146
Tissue enhanced
Detected in all
brain:
51.2
RNF150
ENSSSCG00000009053
ENSG00000170153
Ring finger protein 150
Tissue enhanced
Detected in many
large intestine:
42.4
RNF208
ENSSSCG00000005858
ENSG00000212864
Ring finger protein 208
Tissue enriched
Detected in many
brain:
28.7
RNF39
ENSSSCG00000025208
ENSG00000204618
RING finger protein 39
Tissue enhanced
Detected in many
cornea:
42.2
RNF44
ENSSSCG00000014056
ENSG00000146083
Ring finger protein 44
Low tissue specificity
Detected in all
ROBO4
ENSSSCG00000015203
ENSG00000154133
Roundabout guidance receptor 4
Low tissue specificity
Detected in many
ROMO1
ENSSSCG00000007308
ENSG00000125995
Reactive oxygen species modulator 1
Low tissue specificity
Detected in all
RPA1
ENSSSCG00000017822
ENSG00000132383
Replication protein A1
Low tissue specificity
Detected in all
RPA2
ENSSSCG00000003583
ENSG00000117748
Replication protein A 32 kDa subunit
Low tissue specificity
Detected in all
RPL10
ENSSSCG00000035997
60S ribosomal protein L10
Tissue enhanced
Detected in all
lens:
361.8
RPL10A
ENSSSCG00000001543
ENSG00000198755
Ribosomal protein L10a
Tissue enhanced
Detected in all
male glands:
248.5
RPL11
ENSSSCG00000024260
ENSG00000142676
60S ribosomal protein L11
Tissue enhanced
Detected in all
lens:
391.3
RPL17-C18orf32
ENSSSCG00000035007
ENSG00000215472
60S ribosomal protein L17
Tissue enhanced
Detected in all
male glands:
245.9
RPL22
ENSSSCG00000040777
ENSG00000116251
60S ribosomal protein L22
Low tissue specificity
Detected in all
RPL23
ENSSSCG00000038880
ENSG00000125691
60S ribosomal protein L23
Low tissue specificity
Detected in all
RPL26L1
ENSSSCG00000016989
ENSG00000037241
60S ribosomal protein L26-like 1
Low tissue specificity
Detected in all
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