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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PRDX5
ENSSSCG00000013030
ENSG00000126432
Peroxiredoxin-5, mitochondrial
Tissue enhanced
Detected in all
male glands:
87.6
PREX1
ENSSSCG00000031118
ENSG00000124126
Phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1
Tissue enhanced
Detected in all
cartilage:
38.9
lymphoid tissue:
37.3
PREX2
ENSSSCG00000006199
ENSG00000046889
Phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2
Low tissue specificity
Detected in many
PRIMA1
ENSSSCG00000002464
ENSG00000175785
Proline rich membrane anchor 1
Tissue enhanced
Detected in many
brain:
34.8
mesothelial tissue:
28.9
PRKAA2
ENSSSCG00000036145
ENSG00000162409
5'-AMP-activated protein kinase catalytic subunit alpha-2
Tissue enhanced
Detected in many
heart:
38.4
skeletal muscle:
54.3
PRKAG2
ENSSSCG00000016432
ENSG00000106617
Protein kinase AMP-activated non-catalytic subunit gamma 2
Low tissue specificity
Detected in all
PRKAR1B
ENSSSCG00000007542
ENSG00000188191
Protein kinase cAMP-dependent type I regulatory subunit beta
Tissue enriched
Detected in many
brain:
37.7
PRKAR2B
ENSSSCG00000037706
ENSG00000005249
Protein kinase cAMP-dependent type II regulatory subunit beta
Tissue enhanced
Detected in many
adipose tissue:
55.9
PRKCA
ENSSSCG00000017268
ENSG00000154229
Protein kinase C alpha
Tissue enhanced
Detected in all
brain:
40.2
vagus nerve:
44.0
PRKCE
ENSSSCG00000008444
ENSG00000171132
Protein kinase C epsilon
Tissue enhanced
Detected in many
brain:
44.3
PRKCI
ENSSSCG00000011745
ENSG00000163558
Protein kinase C iota
Low tissue specificity
Detected in all
PRKD1
ENSSSCG00000001975
ENSG00000184304
Protein kinase D1
Low tissue specificity
Detected in all
PRKD3
ENSSSCG00000008495
ENSG00000115825
Protein kinase D3
Low tissue specificity
Detected in all
PRKN
ENSSSCG00000004032
ENSG00000185345
E3 ubiquitin-protein ligase parkin
Low tissue specificity
Detected in all
PRLR
ENSSSCG00000016830
ENSG00000113494
Prolactin receptor precursor
Tissue enhanced
Detected in many
adrenal gland:
51.2
choroid plexus:
87.3
PRNP
ENSSSCG00000007039
ENSG00000171867
Prion protein
Low tissue specificity
Detected in all
PROM1
ENSSSCG00000008745
ENSG00000007062
Prominin 1
Group enriched
Detected in many
male glands:
120.2
retina:
46.7
upper respiratory system:
41.6
PROM2
ENSSSCG00000008118
ENSG00000155066
Prominin 2
Tissue enhanced
Detected in many
cornea:
71.6
stomach:
54.5
PROS1
ENSSSCG00000025463
ENSG00000184500
Protein S
Tissue enhanced
Detected in all
choroid plexus:
61.8
liver:
44.4
PRPS2
ENSSSCG00000012116
ENSG00000101911
Ribose-phosphate pyrophosphokinase 2
Tissue enriched
Detected in all
male glands:
139.6
PRR12
ENSSSCG00000032668
ENSG00000126464
Proline rich 12
Low tissue specificity
Detected in all
PRR15
ENSSSCG00000016686
ENSG00000176532
Proline rich 15
Tissue enriched
Detected in many
male glands:
87.3
PRR16
ENSSSCG00000039760
ENSG00000184838
Proline rich 16
Tissue enhanced
Detected in many
adrenal gland:
54.5
pineal gland:
30.3
PRRC1
ENSSSCG00000014252
ENSG00000164244
Proline rich coiled-coil 1
Tissue enhanced
Detected in all
male glands:
62.7
PRRG1
ENSSSCG00000027777
ENSG00000130962
Proline rich and Gla domain 1
Tissue enhanced
Detected in all
brain:
47.4
vagus nerve:
33.3
PRRT1
ENSSSCG00000024403
ENSG00000204314
Proline-rich transmembrane protein 1
Tissue enhanced
Detected in many
brain:
47.7
thyroid gland:
44.6
PRSS27
ENSSSCG00000008062
ENSG00000172382
Serine protease 27
Tissue enriched
Detected in some
mouth:
61.5
PRSS33
ENSSSCG00000030518
ENSG00000103355
Serine protease 33
Tissue enhanced
Detected in some
male glands:
20.5
salivary gland:
10.3
upper respiratory system:
20.2
PRUNE1
ENSSSCG00000006641
ENSG00000143363
Prune exopolyphosphatase 1
Low tissue specificity
Detected in all
PSAPL1
ENSSSCG00000008714
ENSG00000178597
Prosaposin like 1 (gene/pseudogene)
Group enriched
Detected in some
breast:
6.7
cornea:
10.1
male glands:
13.7
skin:
5.4
urinary bladder:
17.8
PSMB1
ENSSSCG00000027257
ENSG00000008018
Proteasome subunit beta type-1
Tissue enhanced
Detected in all
lens:
108.0
PSMB2
ENSSSCG00000035914
ENSG00000126067
Proteasome subunit beta 2
Tissue enhanced
Detected in all
lens:
56.7
PSMD5
ENSSSCG00000005507
ENSG00000095261
Proteasome 26S subunit, non-ATPase 5
Low tissue specificity
Detected in all
PSMD8
ENSSSCG00000036658
ENSG00000099341
Proteasome 26S subunit, non-ATPase 8
Low tissue specificity
Detected in all
PSP-II
ENSSSCG00000002978
Major seminal plasma glycoprotein PSP-II precursor
Tissue enriched
Detected in some
male glands:
3633.2
PSPH
ENSSSCG00000007748
ENSG00000146733
Phosphoserine phosphatase
Low tissue specificity
Detected in all
PSTPIP2
ENSSSCG00000004497
ENSG00000152229
Proline-serine-threonine phosphatase interacting protein 2
Group enriched
Detected in many
lymphoid tissue:
58.5
skeletal muscle:
57.8
PTAFR
ENSSSCG00000031788
ENSG00000169403
Platelet activating factor receptor
Tissue enhanced
Detected in many
synovial tissue:
31.3
PTBP3
ENSSSCG00000005466
ENSG00000119314
Polypyrimidine tract-binding protein 3
Low tissue specificity
Detected in all
PTCH2
ENSSSCG00000031977
ENSG00000117425
Patched 2
Tissue enhanced
Detected in many
cartilage:
28.8
PTER
ENSSSCG00000022953
ENSG00000165983
Phosphotriesterase-related protein
Tissue enhanced
Detected in all
kidney:
61.1
PTGER2
ENSSSCG00000021862
ENSG00000125384
Prostaglandin E receptor 2
Low tissue specificity
Detected in all
PTGS2
ENSSSCG00000015579
ENSG00000073756
Prostaglandin G/H synthase 2 precursor
Low tissue specificity
Detected in many
PTHLH
ENSSSCG00000036893
ENSG00000087494
Parathyroid hormone-related protein precursor
Tissue enhanced
Detected in all
male glands:
30.5
PTK2
ENSSSCG00000038397
ENSG00000169398
Protein tyrosine kinase 2
Low tissue specificity
Detected in all
PTP4A1
ENSSSCG00000025941
ENSG00000112245
Protein tyrosine phosphatase type IVA, member 1
Low tissue specificity
Detected in all
PTPMT1
ENSSSCG00000013226
ENSG00000110536
Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1
Low tissue specificity
Detected in all
PTPN13
ENSSSCG00000026655
ENSG00000163629
Protein tyrosine phosphatase, non-receptor type 13
Low tissue specificity
Detected in all
PTPN18
ENSSSCG00000015735
ENSG00000072135
Protein tyrosine phosphatase, non-receptor type 18
Tissue enhanced
Detected in many
male glands:
60.7
PTPN4
ENSSSCG00000015743
ENSG00000088179
Protein tyrosine phosphatase, non-receptor type 4
Tissue enhanced
Detected in all
brain:
34.1
skeletal muscle:
32.3
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