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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PLEKHA8
ENSSSCG00000016682
ENSG00000106086
Pleckstrin homology domain containing A8
Low tissue specificity
Detected in all
PLEKHB1
ENSSSCG00000014827
ENSG00000021300
Pleckstrin homology domain-containing family B member 1
Group enriched
Detected in many
brain:
163.6
pineal gland:
61.6
retina:
103.4
vagus nerve:
86.5
PLEKHG1
ENSSSCG00000032778
ENSG00000120278
Pleckstrin homology and RhoGEF domain containing G1
Tissue enhanced
Detected in all
epididymis:
44.9
PLEKHG2
ENSSSCG00000030048
ENSG00000090924
Pleckstrin homology and RhoGEF domain containing G2
Tissue enhanced
Detected in many
vagus nerve:
42.8
PLEKHH1
ENSSSCG00000002292
ENSG00000054690
Pleckstrin homology, MyTH4 and FERM domain containing H1
Tissue enhanced
Detected in many
brain:
75.3
male glands:
20.5
PLEKHS1
ENSSSCG00000034754
ENSG00000148735
Pleckstrin homology domain containing S1
Low tissue specificity
Detected in all
PLGRKT
ENSSSCG00000005212
ENSG00000107020
Plasminogen receptor (KT)
Low tissue specificity
Detected in all
PLK1
ENSSSCG00000026748
ENSG00000166851
Polo like kinase 1
Tissue enhanced
Detected in many
stomach:
42.9
testis:
73.2
PLN
ENSSSCG00000034163
ENSG00000198523
Cardiac phospholamban
Tissue enhanced
Detected in many
heart:
807.9
skeletal muscle:
233.5
PLOD2
ENSSSCG00000011689
ENSG00000152952
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2
Tissue enhanced
Detected in many
cartilage:
73.6
PLP2
ENSSSCG00000012294
ENSG00000102007
Proteolipid protein 2
Low tissue specificity
Detected in all
PLPP1
ENSSSCG00000016912
ENSG00000067113
Phospholipid phosphatase 1
Low tissue specificity
Detected in all
PLPP6
ENSSSCG00000005220
ENSG00000205808
Phospholipid phosphatase 6
Tissue enhanced
Detected in all
male glands:
31.2
PLPPR5
ENSSSCG00000006876
ENSG00000117598
Phospholipid phosphatase-related protein type 5
Group enriched
Detected in many
brain:
33.4
pituitary gland:
11.5
PLS3
ENSSSCG00000012597
ENSG00000102024
Plastin 3
Low tissue specificity
Detected in all
PLXDC1
ENSSSCG00000017511
ENSG00000161381
Plexin domain containing 1
Tissue enhanced
Detected in many
cervix:
31.1
synovial tissue:
58.1
PLXDC2
ENSSSCG00000032444
ENSG00000120594
Plexin domain containing 2
Low tissue specificity
Detected in all
PLXNA2
ENSSSCG00000026412
ENSG00000076356
Plexin A2
Low tissue specificity
Detected in many
PLXND1
ENSSSCG00000011592
ENSG00000004399
Plexin D1
Low tissue specificity
Detected in many
PMPCB
ENSSSCG00000015422
ENSG00000105819
Peptidase, mitochondrial processing beta subunit
Low tissue specificity
Detected in all
PNMA1
ENSSSCG00000002346
ENSG00000176903
PNMA family member 1
Tissue enhanced
Detected in all
brain:
29.6
pituitary gland:
32.1
PNP
ENSSSCG00000002135
ENSG00000198805
Purine nucleoside phosphorylase
Low tissue specificity
Detected in many
POC5
ENSSSCG00000014084
ENSG00000152359
POC5 centriolar protein
Low tissue specificity
Detected in all
POLE4
ENSSSCG00000038307
ENSG00000115350
DNA polymerase epsilon 4, accessory subunit
Tissue enhanced
Detected in all
male glands:
69.3
POLR2J
ENSSSCG00000007688
ENSG00000005075
RNA polymerase II subunit J
Low tissue specificity
Detected in all
POMP
ENSSSCG00000037170
ENSG00000132963
Proteasome maturation protein
Tissue enhanced
Detected in all
lens:
78.2
PON2
ENSSSCG00000015331
ENSG00000105854
Serum paraoxonase/arylesterase 2 precursor
Tissue enhanced
Detected in many
lens:
39.3
POPDC3
ENSSSCG00000004367
ENSG00000132429
Popeye domain-containing protein 3
Tissue enhanced
Detected in all
heart:
22.6
skeletal muscle:
39.2
POU3F3
ENSSSCG00000022096
ENSG00000198914
POU class 3 homeobox 3
Tissue enhanced
Detected in some
epididymis:
29.3
kidney:
28.5
male glands:
66.6
PPA1
ENSSSCG00000010261
ENSG00000180817
Pyrophosphatase (inorganic) 1
Tissue enhanced
Detected in many
brain:
55.9
pineal gland:
64.9
PPARA
ENSSSCG00000000006
ENSG00000186951
Peroxisome proliferator-activated receptor alpha
Tissue enhanced
Detected in all
kidney:
45.2
liver:
68.3
PPARGC1A
ENSSSCG00000029275
ENSG00000109819
Peroxisome proliferator-activated receptor gamma coactivator 1-alpha
Tissue enhanced
Detected in many
kidney:
43.3
male glands:
65.2
salivary gland:
35.2
PPEF1
ENSSSCG00000030274
ENSG00000086717
Protein phosphatase with EF-hand domain 1
Group enriched
Detected in many
brain:
37.4
testis:
15.5
PPIF
ENSSSCG00000010330
ENSG00000108179
Peptidylprolyl isomerase F
Tissue enhanced
Detected in all
choroid plexus:
60.1
PPM1A
ENSSSCG00000005084
ENSG00000100614
Protein phosphatase, Mg2+/Mn2+ dependent 1A
Low tissue specificity
Detected in all
PPM1H
ENSSSCG00000036751
ENSG00000111110
Protein phosphatase, Mg2+/Mn2+ dependent 1H
Low tissue specificity
Detected in all
PPM1K
ENSSSCG00000038867
ENSG00000163644
Protein phosphatase, Mg2+/Mn2+ dependent 1K
Tissue enhanced
Detected in all
heart:
48.7
PPM1L
ENSSSCG00000023434
ENSG00000163590
Protein phosphatase, Mg2+/Mn2+ dependent 1L
Tissue enhanced
Detected in many
skeletal muscle:
36.8
PPP1CB
ENSSSCG00000008540
ENSG00000213639
Serine/threonine-protein phosphatase PP1-beta catalytic subunit
Low tissue specificity
Detected in all
PPP1R1B
ENSSSCG00000017498
ENSG00000131771
Protein phosphatase 1 regulatory inhibitor subunit 1B
Tissue enhanced
Detected in many
brain:
198.3
choroid plexus:
83.9
male glands:
76.8
PPP1R3G
ENSSSCG00000000997
ENSG00000219607
Protein phosphatase 1 regulatory subunit 3G
Tissue enhanced
Detected in many
heart:
21.6
PPP2CA
ENSSSCG00000014298
ENSG00000113575
Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform
Low tissue specificity
Detected in all
PPP2CB
ENSSSCG00000015842
ENSG00000104695
Protein phosphatase 2 catalytic subunit beta
Tissue enhanced
Detected in all
lens:
60.8
PPP2R2C
ENSSSCG00000008712
ENSG00000074211
Protein phosphatase 2 regulatory subunit Bgamma
Tissue enriched
Detected in some
brain:
43.6
PPP4R2
ENSSSCG00000037216
ENSG00000163605
Protein phosphatase 4 regulatory subunit 2
Low tissue specificity
Detected in all
PPP4R4
ENSSSCG00000002474
ENSG00000119698
Protein phosphatase 4 regulatory subunit 4
Tissue enhanced
Detected in many
brain:
32.8
epididymis:
41.9
testis:
29.0
PPP6C
ENSSSCG00000005600
ENSG00000119414
Serine/threonine-protein phosphatase 6 catalytic subunit
Low tissue specificity
Detected in all
PRDM16
ENSSSCG00000021490
ENSG00000142611
PR/SET domain 16
Tissue enhanced
Detected in many
lymphoid tissue:
33.7
PRDX3
ENSSSCG00000010682
ENSG00000165672
Thioredoxin-dependent peroxide reductase, mitochondrial
Tissue enhanced
Detected in all
ovary:
91.6
PRDX4
ENSSSCG00000012171
ENSG00000123131
Peroxiredoxin 4
Low tissue specificity
Detected in all
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