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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PFKFB1
ENSSSCG00000024814
ENSG00000158571
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1
Tissue enhanced
Detected in all
liver:
52.2
skeletal muscle:
64.5
PFKFB3
ENSSSCG00000011133
ENSG00000170525
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
Tissue enhanced
Detected in many
cartilage:
45.0
kidney:
49.1
skeletal muscle:
57.0
PFKM
ENSSSCG00000021129
ENSG00000152556
ATP-dependent 6-phosphofructokinase, muscle type
Tissue enhanced
Detected in many
heart:
66.0
skeletal muscle:
163.3
PFN2
ENSSSCG00000030260
ENSG00000070087
Profilin 2
Tissue enhanced
Detected in all
brain:
94.9
lens:
57.1
PGAP2
ENSSSCG00000035653
ENSG00000148985
Post-GPI attachment to proteins 2
Tissue enhanced
Detected in all
epididymis:
93.7
male glands:
67.6
PGF
ENSSSCG00000002376
ENSG00000119630
Placental growth factor
Tissue enhanced
Detected in many
male glands:
50.9
PGLYRP1
ENSSSCG00000038688
ENSG00000008438
Peptidoglycan recognition protein 1 precursor
Tissue enhanced
Detected in many
bone marrow:
20.7
dura mater:
24.7
upper respiratory system:
70.5
PGM3
ENSSSCG00000004456
ENSG00000013375
Phosphoglucomutase 3
Tissue enhanced
Detected in all
male glands:
47.1
PGM5
ENSSSCG00000005243
ENSG00000154330
Phosphoglucomutase 5
Tissue enhanced
Detected in many
ductus deferens:
87.8
smooth muscle:
116.8
urinary bladder:
103.9
PGRMC1
ENSSSCG00000012625
ENSG00000101856
Membrane-associated progesterone receptor component 1
Tissue enhanced
Detected in all
liver:
119.5
PGRMC2
ENSSSCG00000009072
Membrane-associated progesterone receptor component 2
Low tissue specificity
Detected in all
PHACTR2
ENSSSCG00000004132
ENSG00000112419
Phosphatase and actin regulator 2
Low tissue specificity
Detected in all
PHC1
ENSSSCG00000000661
ENSG00000111752
Polyhomeotic-like protein 1
Tissue enhanced
Detected in all
testis:
51.1
PHEX
ENSSSCG00000012167
ENSG00000102174
Phosphate-regulating neutral endopeptidase
Tissue enhanced
Detected in many
aorta:
17.9
upper respiratory system:
18.1
PHF21B
ENSSSCG00000000020
ENSG00000056487
PHD finger protein 21B
Low tissue specificity
Detected in many
PHGDH
ENSSSCG00000006717
ENSG00000092621
D-3-phosphoglycerate dehydrogenase
Tissue enhanced
Detected in many
brain:
44.1
endometrium:
80.4
PHLDA1
ENSSSCG00000000521
ENSG00000139289
Pleckstrin homology like domain family A member 1
Tissue enhanced
Detected in all
cartilage:
197.4
salivary gland:
118.9
PHLDB3
ENSSSCG00000003063
ENSG00000176531
Pleckstrin homology like domain family B member 3
Tissue enhanced
Detected in many
male glands:
38.3
PHYH
ENSSSCG00000039244
ENSG00000107537
Phytanoyl-CoA dioxygenase, peroxisomal
Tissue enhanced
Detected in all
liver:
56.3
PHYHIP
ENSSSCG00000009621
ENSG00000168490
Phytanoyl-CoA 2-hydroxylase interacting protein
Tissue enriched
Detected in many
brain:
63.3
PICALM
ENSSSCG00000014913
ENSG00000073921
Phosphatidylinositol-binding clathrin assembly protein
Low tissue specificity
Detected in all
PIDD1
ENSSSCG00000012843
ENSG00000177595
P53-induced death domain protein 1
Low tissue specificity
Detected in all
PIGC
ENSSSCG00000015486
ENSG00000135845
Phosphatidylinositol N-acetylglucosaminyltransferase subunit C
Low tissue specificity
Detected in all
PIGK
ENSSSCG00000038329
ENSG00000142892
GPI-anchor transamidase precursor
Tissue enhanced
Detected in all
pituitary gland:
32.3
PIGP
ENSSSCG00000012061
ENSG00000185808
Phosphatidylinositol N-acetylglucosaminyltransferase subunit P
Tissue enhanced
Detected in all
choroid plexus:
51.7
lens:
99.5
PIGY
ENSSSCG00000009211
ENSG00000145337
Protein preY, mitochondrial
Low tissue specificity
Detected in all
PIK3C2A
ENSSSCG00000025406
ENSG00000011405
Phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha
Low tissue specificity
Detected in all
PIK3R3
ENSSSCG00000003909
ENSG00000117461
Phosphoinositide-3-kinase regulatory subunit 3
Tissue enhanced
Detected in all
brain:
52.5
PIMREG
ENSSSCG00000017893
ENSG00000129195
PICALM interacting mitotic regulator
Tissue enhanced
Detected in many
adrenal gland:
13.7
male glands:
14.0
mouth:
12.8
PIP4K2C
ENSSSCG00000000436
ENSG00000166908
Phosphatidylinositol-5-phosphate 4-kinase type 2 gamma
Group enriched
Detected in many
male glands:
21.5
thyroid gland:
72.0
PIR
ENSSSCG00000012136
ENSG00000087842
Pirin
Tissue enhanced
Detected in all
lens:
47.8
PITHD1
ENSSSCG00000023495
ENSG00000057757
PITH domain containing 1
Tissue enhanced
Detected in all
lens:
61.1
PITPNC1
ENSSSCG00000017274
ENSG00000154217
Cytoplasmic phosphatidylinositol transfer protein 1
Tissue enhanced
Detected in all
lymphoid tissue:
103.0
PITPNM3
ENSSSCG00000017892
ENSG00000091622
PITPNM family member 3
Tissue enhanced
Detected in many
adrenal gland:
28.9
male glands:
32.4
retina:
34.6
PITX2
ENSSSCG00000034708
ENSG00000164093
Pituitary homeobox 2
Tissue enhanced
Detected in many
cornea:
16.8
large intestine:
18.7
mouth:
13.0
pituitary gland:
35.4
urinary bladder:
12.4
PJA2
ENSSSCG00000022845
ENSG00000198961
Praja ring finger ubiquitin ligase 2
Tissue enhanced
Detected in all
brain:
57.1
PKD1
ENSSSCG00000008041
ENSG00000008710
Polycystin-1 precursor
Tissue enhanced
Detected in all
cartilage:
58.6
PKIB
ENSSSCG00000004236
ENSG00000135549
CAMP-dependent protein kinase inhibitor beta
Tissue enhanced
Detected in many
brain:
30.0
cornea:
40.2
male glands:
32.0
stomach:
35.0
PLA2G12A
ENSSSCG00000009139
ENSG00000123739
Phospholipase A2 group XIIA
Low tissue specificity
Detected in all
PLA2G16
ENSSSCG00000026914
ENSG00000176485
HRAS-like suppressor 3
Tissue enhanced
Detected in all
lens:
127.2
PLA2G1B
ENSSSCG00000029501
ENSG00000170890
Phospholipase A2, major isoenzyme precursor
Low tissue specificity
Detected in all
PLA2G4A
ENSSSCG00000023351
ENSG00000116711
Phospholipase A2 group IVA
Low tissue specificity
Detected in many
PLA2G7
ENSSSCG00000001723
ENSG00000146070
Platelet-activating factor acetylhydrolase isoform 1 precursor
Tissue enhanced
Detected in all
lens:
62.1
PLCB1
ENSSSCG00000007056
ENSG00000182621
Phospholipase C beta 1
Tissue enhanced
Detected in many
male glands:
57.8
PLCD3
ENSSSCG00000017338
ENSG00000161714
Phospholipase C delta 3
Low tissue specificity
Detected in all
PLCH1
ENSSSCG00000026718
ENSG00000114805
Phospholipase C eta 1
Tissue enhanced
Detected in many
epididymis:
28.2
male glands:
43.3
PLCL2
ENSSSCG00000029811
ENSG00000154822
Phospholipase C like 2
Low tissue specificity
Detected in many
PLD4
ENSSSCG00000002554
ENSG00000166428
Phospholipase D family member 4
Tissue enhanced
Detected in many
lymphoid tissue:
30.6
synovial tissue:
41.7
PLD5
ENSSSCG00000021132
ENSG00000180287
Phospholipase D family member 5
Group enriched
Detected in many
brain:
21.5
choroid plexus:
31.4
male glands:
12.0
PLEKHA6
ENSSSCG00000015281
ENSG00000143850
Pleckstrin homology domain containing A6
Tissue enhanced
Detected in many
stomach:
67.2
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