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Chromosome
1
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7
8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Male glands
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MFSD6
ENSSSCG00000016052
ENSG00000151690
Major facilitator superfamily domain-containing protein 6
Tissue enhanced
Detected in all
male glands:
49.0
MFSD6L
ENSSSCG00000032938
ENSG00000185156
Major facilitator superfamily domain containing 6 like
Tissue enhanced
Detected in many
male glands:
36.5
testis:
14.8
MGAT4A
ENSSSCG00000008188
ENSG00000071073
Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A
Low tissue specificity
Detected in all
MGAT4B
ENSSSCG00000014017
ENSG00000161013
Mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme B
Tissue enhanced
Detected in all
stomach:
61.2
MGAT5
ENSSSCG00000015701
ENSG00000152127
Mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase
Tissue enhanced
Detected in all
male glands:
101.7
MGST1
ENSSSCG00000032580
ENSG00000008394
Microsomal glutathione S-transferase 1
Tissue enhanced
Detected in all
liver:
129.2
thyroid gland:
154.6
MIA3
ENSSSCG00000010834
ENSG00000154305
MIA family member 3, ER export factor
Tissue enhanced
Detected in all
male glands:
108.1
MIB1
ENSSSCG00000025478
ENSG00000101752
Mindbomb E3 ubiquitin protein ligase 1
Low tissue specificity
Detected in all
MICAL2
ENSSSCG00000013400
ENSG00000133816
Microtubule associated monooxygenase, calponin and LIM domain containing 2
Tissue enhanced
Detected in all
heart:
56.7
MICU3
ENSSSCG00000006981
ENSG00000155970
Mitochondrial calcium uptake family member 3
Tissue enhanced
Detected in all
brain:
41.3
MID1
ENSSSCG00000012110
ENSG00000101871
Midline 1
Low tissue specificity
Detected in all
MIEN1
ENSSSCG00000017496
ENSG00000141741
Migration and invasion enhancer 1
Low tissue specificity
Detected in all
MINDY3
ENSSSCG00000011045
ENSG00000148481
MINDY lysine 48 deubiquitinase 3
Tissue enhanced
Detected in all
lens:
86.6
MINDY4
ENSSSCG00000016674
ENSG00000106125
MINDY lysine 48 deubiquitinase 4
Low tissue specificity
Detected in all
MIOX
ENSSSCG00000023749
ENSG00000100253
Inositol oxygenase
Group enriched
Detected in many
kidney:
100.7
thyroid gland:
68.8
MIPOL1
ENSSSCG00000039714
ENSG00000151338
Mirror-image polydactyly 1
Low tissue specificity
Detected in all
MIS12
ENSSSCG00000034958
ENSG00000167842
MIS12, kinetochore complex component
Low tissue specificity
Detected in all
MISP3
ENSSSCG00000013768
ENSG00000141854
Uncharacterized protein MISP3
Tissue enhanced
Detected in all
male glands:
55.7
MKNK1
ENSSSCG00000003898
ENSG00000079277
MAP kinase-interacting serine/threonine-protein kinase 1
Low tissue specificity
Detected in all
MKX
ENSSSCG00000029783
ENSG00000150051
Mohawk homeobox
Tissue enhanced
Detected in many
cartilage:
33.3
penis:
37.4
MLF1
ENSSSCG00000037461
ENSG00000178053
Myeloid leukemia factor 1
Tissue enhanced
Detected in many
choroid plexus:
51.9
heart:
51.4
skeletal muscle:
80.9
testis:
86.7
MLPH
ENSSSCG00000032849
ENSG00000115648
Melanophilin
Tissue enhanced
Detected in many
esophagus:
60.9
male glands:
95.7
salivary gland:
81.4
stomach:
67.7
MLXIP
ENSSSCG00000009794
ENSG00000175727
MLX interacting protein
Low tissue specificity
Detected in all
MLXIPL
ENSSSCG00000007710
ENSG00000009950
MLX interacting protein like
Tissue enhanced
Detected in many
adipose tissue:
74.7
liver:
76.6
MMADHC
ENSSSCG00000028646
ENSG00000168288
Methylmalonic aciduria and homocystinuria, cblD type
Tissue enhanced
Detected in all
lens:
37.7
MMGT1
ENSSSCG00000025854
ENSG00000169446
Membrane magnesium transporter 1 precursor
Low tissue specificity
Detected in all
MMP15
ENSSSCG00000002806
ENSG00000102996
Matrix metallopeptidase 15
Tissue enhanced
Detected in all
stomach:
61.4
MMP2
ENSSSCG00000002829
ENSG00000087245
72 kDa type IV collagenase precursor
Tissue enhanced
Detected in all
cervix:
147.1
MMP28
ENSSSCG00000034440
ENSG00000271447
Matrix metallopeptidase 28
Tissue enhanced
Detected in many
penis:
38.4
MOB1A
ENSSSCG00000039221
ENSG00000114978
MOB kinase activator 1A
Low tissue specificity
Detected in all
MOCS3
ENSSSCG00000007475
ENSG00000124217
Adenylyltransferase and sulfurtransferase MOCS3
Low tissue specificity
Detected in all
MOGAT1
ENSSSCG00000016225
ENSG00000124003
Monoacylglycerol O-acyltransferase 1
Tissue enhanced
Detected in many
liver:
46.2
small intestine:
16.4
MORF4L1
ENSSSCG00000001769
ENSG00000185787
Mortality factor 4 like 1
Low tissue specificity
Detected in all
MORF4L2
ENSSSCG00000012534
ENSG00000123562
Mortality factor 4 like 2
Low tissue specificity
Detected in all
MORN2
ENSSSCG00000008480
ENSG00000188010
MORN repeat containing 2
Tissue enhanced
Detected in all
choroid plexus:
73.2
testis:
66.9
MOSPD2
ENSSSCG00000012131
ENSG00000130150
Motile sperm domain-containing protein 2
Tissue enhanced
Detected in all
lens:
33.6
MOXD1
ENSSSCG00000004191
ENSG00000079931
Monooxygenase DBH like 1
Tissue enhanced
Detected in many
cornea:
73.8
liver:
18.1
skin:
19.6
MPC1
ENSSSCG00000032916
ENSG00000060762
Mitochondrial pyruvate carrier 1
Low tissue specificity
Detected in all
MPDU1
ENSSSCG00000017955
ENSG00000129255
Mannose-P-dolichol utilization defect 1 protein
Low tissue specificity
Detected in all
MPPED1
ENSSSCG00000038685
ENSG00000186732
Metallophosphoesterase domain containing 1
Tissue enhanced
Detected in some
brain:
41.2
male glands:
15.0
stomach:
10.4
MPPED2
ENSSSCG00000013327
ENSG00000066382
Metallophosphoesterase domain containing 2
Tissue enhanced
Detected in many
kidney:
28.2
male glands:
33.9
MPZL2
ENSSSCG00000015091
ENSG00000149573
Myelin protein zero-like protein 2 precursor
Tissue enhanced
Detected in many
cornea:
52.8
dura mater:
44.6
mouth:
39.8
MRAP2
ENSSSCG00000026943
ENSG00000135324
Melanocortin 2 receptor accessory protein 2
Tissue enhanced
Detected in many
cervix:
61.1
endometrium:
22.3
male glands:
25.1
MRPL13
ENSSSCG00000005996
ENSG00000172172
39S ribosomal protein L13, mitochondrial
Low tissue specificity
Detected in all
MRPL3
ENSSSCG00000011179
ENSG00000114686
Mitochondrial ribosomal protein L3
Low tissue specificity
Detected in all
MRPL34
ENSSSCG00000039295
ENSG00000130312
Mitochondrial ribosomal protein L34
Low tissue specificity
Detected in all
MRPL51
ENSSSCG00000039662
ENSG00000111639
Mitochondrial ribosomal protein L51
Tissue enhanced
Detected in all
testis:
57.8
MRPL57
ENSSSCG00000031280
ENSG00000173141
Mitochondrial ribosomal protein L57
Tissue enhanced
Detected in all
male glands:
85.8
MRPS35
ENSSSCG00000000547
ENSG00000061794
28S ribosomal protein S35, mitochondrial
Low tissue specificity
Detected in all
MRPS6
ENSSSCG00000026981
ENSG00000243927
Mitochondrial ribosomal protein S6
Tissue enhanced
Detected in all
lens:
62.4
male glands:
50.3
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