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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
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Other diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MRVI1
ENSSSCG00000020720
ENSG00000072952
Murine retrovirus integration site 1 homolog
Tissue enhanced
Detected in many
smooth muscle:
58.2
MSI1
ENSSSCG00000029365
ENSG00000135097
RNA-binding protein Musashi homolog 1
Tissue enhanced
Detected in all
lens:
43.9
retina:
48.9
MSMB
ENSSSCG00000010400
ENSG00000263639
Beta-microseminoprotein precursor
Tissue enriched
Detected in some
male glands:
2458.8
MSMO1
ENSSSCG00000008857
ENSG00000052802
Methylsterol monooxygenase 1
Tissue enhanced
Detected in all
brain:
67.2
liver:
52.2
ovary:
61.3
MSRB3
ENSSSCG00000026004
ENSG00000174099
Methionine sulfoxide reductase B3
Tissue enhanced
Detected in many
smooth muscle:
70.8
MSX1
ENSSSCG00000008727
ENSG00000163132
Homeobox protein MSX-1
Tissue enhanced
Detected in many
choroid plexus:
36.0
endometrium:
42.5
penis:
30.6
MT3
ENSSSCG00000024305
ENSG00000087250
Metallothionein-3
Tissue enhanced
Detected in many
brain:
123.6
pineal gland:
25.4
pituitary gland:
40.4
MTCH1
ENSSSCG00000001571
ENSG00000137409
Mitochondrial carrier homolog 1 isoform 1
Tissue enhanced
Detected in all
male glands:
141.8
MTHFD1L
ENSSSCG00000004092
ENSG00000120254
Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like
Tissue enhanced
Detected in many
epididymis:
39.7
lens:
35.0
MTHFD2
ENSSSCG00000008289
ENSG00000065911
Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase
Tissue enhanced
Detected in all
male glands:
39.3
ovary:
29.7
MTHFR
ENSSSCG00000003428
ENSG00000177000
Methylenetetrahydrofolate reductase
Tissue enriched
Detected in all
epididymis:
94.0
MTMR2
ENSSSCG00000014970
ENSG00000087053
Myotubularin related protein 2
Low tissue specificity
Detected in all
MTPN
ENSSSCG00000039290
ENSG00000105887
Myotrophin
Tissue enhanced
Detected in all
lens:
94.6
MTR
ENSSSCG00000010143
ENSG00000116984
5-methyltetrahydrofolate-homocysteine methyltransferase
Low tissue specificity
Detected in all
MTSS1
ENSSSCG00000005975
ENSG00000170873
MTSS1, I-BAR domain containing
Low tissue specificity
Detected in all
MTX2
ENSSSCG00000022222
ENSG00000128654
Metaxin-2
Low tissue specificity
Detected in all
MUC15
ENSSSCG00000013340
ENSG00000169550
Mucin 15, cell surface associated
Tissue enriched
Detected in some
epididymis:
114.0
MUM1L1
ENSSSCG00000012548
ENSG00000157502
MUM1 like 1
Tissue enhanced
Detected in all
epididymis:
57.4
MUT
ENSSSCG00000001732
ENSG00000146085
Methylmalonyl-CoA mutase, mitochondrial precursor
Tissue enhanced
Detected in all
liver:
61.9
MVB12A
ENSSSCG00000036568
ENSG00000141971
Multivesicular body subunit 12A
Low tissue specificity
Detected in all
MX1
ENSSSCG00000012077
ENSG00000157601
Interferon-induced GTP-binding protein Mx1
Low tissue specificity
Detected in all
MX2
ENSSSCG00000012076
ENSG00000183486
Interferon-induced GTP-binding protein Mx2
Low tissue specificity
Detected in all
MYC
ENSSSCG00000005965
ENSG00000136997
Myc proto-oncogene protein
Tissue enhanced
Detected in many
mesothelial tissue:
87.7
MYDGF
ENSSSCG00000034898
ENSG00000074842
Myeloid derived growth factor
Tissue enhanced
Detected in all
male glands:
46.8
MYH11
ENSSSCG00000000146
ENSG00000133392
Myosin heavy chain 11
Tissue enhanced
Detected in many
ductus deferens:
178.9
smooth muscle:
565.6
urinary bladder:
187.5
MYH14
ENSSSCG00000027407
ENSG00000105357
Myosin heavy chain 14
Tissue enhanced
Detected in many
cornea:
86.4
large intestine:
64.0
stomach:
61.9
MYH7
ENSSSCG00000002029
ENSG00000197616
Myosin-7
Group enriched
Detected in some
heart:
575.2
skeletal muscle:
287.0
MYH7B
ENSSSCG00000007288
ENSG00000078814
Myosin heavy chain 7B
Group enriched
Detected in many
heart:
57.1
lens:
20.8
skeletal muscle:
48.9
MYH8
ENSSSCG00000018005
ENSG00000133020
Myosin heavy chain 8
Group enriched
Detected in some
male glands:
66.3
mouth:
23.3
MYL9
ENSSSCG00000036402
ENSG00000101335
Myosin regulatory light polypeptide 9
Tissue enhanced
Detected in many
smooth muscle:
241.8
urinary bladder:
100.0
MYLK
ENSSSCG00000011867
ENSG00000065534
Myosin light chain kinase
Tissue enhanced
Detected in many
ductus deferens:
164.5
endometrium:
133.8
smooth muscle:
313.8
MYO10
ENSSSCG00000016794
ENSG00000145555
Myosin X
Low tissue specificity
Detected in all
MYO19
ENSSSCG00000017682
ENSG00000278259
Myosin XIX
Tissue enhanced
Detected in many
salivary gland:
23.0
MYO1B
ENSSSCG00000016061
ENSG00000128641
Myosin IB
Tissue enhanced
Detected in all
lens:
79.8
male glands:
71.5
MYO1D
ENSSSCG00000017728
ENSG00000176658
Myosin ID
Tissue enhanced
Detected in many
cartilage:
55.8
MYOF
ENSSSCG00000010476
ENSG00000138119
Myoferlin
Low tissue specificity
Detected in all
MYORG
ENSSSCG00000033196
ENSG00000164976
Myogenesis regulating glycosidase (putative)
Tissue enhanced
Detected in all
heart:
42.5
skeletal muscle:
45.8
MYZAP
ENSSSCG00000004598
ENSG00000263155
Myocardial zonula adherens protein
Tissue enriched
Detected in many
heart:
68.8
N4BP3
ENSSSCG00000014034
ENSG00000145911
NEDD4 binding protein 3
Low tissue specificity
Detected in many
na
ENSSSCG00000000097
ENSG00000100216
Low tissue specificity
Detected in all
na
ENSSSCG00000000191
ENSG00000167548
Low tissue specificity
Detected in all
na
ENSSSCG00000000199
ENSG00000123352
Tissue enhanced
Detected in all
male glands:
58.9
na
ENSSSCG00000000220
Low tissue specificity
Detected in many
na
ENSSSCG00000000365
ENSG00000123353
Low tissue specificity
Detected in all
na
ENSSSCG00000000394
ENSG00000144785,ENSG00000257727
Protein canopy homolog 2 precursor
Tissue enhanced
Detected in all
male glands:
100.1
na
ENSSSCG00000000473
ENSG00000155957
Tissue enhanced
Detected in all
male glands:
49.8
na
ENSSSCG00000000522
Nucleosome assembly protein 1-like 1
Low tissue specificity
Detected in all
na
ENSSSCG00000000849
Endoplasmin precursor
Low tissue specificity
Detected in all
na
ENSSSCG00000000908
Tissue enhanced
Detected in all
testis:
130.4
na
ENSSSCG00000000983
ENSG00000188263
Tissue enhanced
Detected in many
esophagus:
43.8
male glands:
34.2
salivary gland:
50.3
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