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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MANSC1
ENSSSCG00000040835
ENSG00000111261
MANSC domain containing 1
Tissue enhanced
Detected in all
male glands:
78.7
MANSC4
ENSSSCG00000000546
ENSG00000205693
MANSC domain containing 4
Low tissue specificity
Detected in all
MAP1B
ENSSSCG00000016974
ENSG00000131711
Microtubule associated protein 1B
Tissue enhanced
Detected in many
brain:
87.9
ovary:
44.6
MAP2
ENSSSCG00000016151
ENSG00000078018
Microtubule associated protein 2
Tissue enhanced
Detected in many
brain:
87.1
pineal gland:
30.2
pituitary gland:
23.3
retina:
21.2
MAP2K6
ENSSSCG00000017254
ENSG00000108984
Mitogen-activated protein kinase kinase 6
Tissue enhanced
Detected in all
liver:
36.4
MAP3K7
ENSSSCG00000004334
ENSG00000135341
Mitogen-activated protein kinase kinase kinase 7
Low tissue specificity
Detected in all
MAP3K8
ENSSSCG00000020705
ENSG00000107968
Mitogen-activated protein kinase kinase kinase 8
Low tissue specificity
Detected in all
MAPK12
ENSSSCG00000032693
ENSG00000188130
Mitogen-activated protein kinase 12
Tissue enhanced
Detected in many
heart:
32.5
male glands:
29.9
skeletal muscle:
52.9
MAPK13
ENSSSCG00000038774
ENSG00000156711
Mitogen-activated protein kinase 13
Tissue enhanced
Detected in many
male glands:
57.3
MAPK15
ENSSSCG00000035933
ENSG00000181085
Mitogen-activated protein kinase 15
Tissue enhanced
Detected in many
fallopian tube:
59.5
lung:
50.4
upper respiratory system:
25.1
MARC2
ENSSSCG00000010826
ENSG00000117791
Mitochondrial amidoxime reducing component 2
Tissue enhanced
Detected in all
kidney:
53.3
liver:
81.3
MARCH10
ENSSSCG00000017299
ENSG00000173838
Membrane associated ring-CH-type finger 10
Tissue enriched
Detected in many
testis:
52.9
MARCH3
ENSSSCG00000014249
ENSG00000173926
E3 ubiquitin-protein ligase MARCH3
Tissue enhanced
Detected in many
ovary:
31.7
MARCKS
ENSSSCG00000037803
ENSG00000277443
Myristoylated alanine rich protein kinase C substrate
Tissue enhanced
Detected in all
lymphoid tissue:
134.8
MARK1
ENSSSCG00000010825
ENSG00000116141
Microtubule affinity regulating kinase 1
Tissue enhanced
Detected in all
lens:
56.0
MAST2
ENSSSCG00000003913
ENSG00000086015
Microtubule associated serine/threonine kinase 2
Low tissue specificity
Detected in all
MAT2A
ENSSSCG00000022300
ENSG00000168906
S-adenosylmethionine synthase
Tissue enriched
Detected in all
epididymis:
268.1
MAT2B
ENSSSCG00000021229
ENSG00000038274
Methionine adenosyltransferase 2 subunit beta
Low tissue specificity
Detected in all
MB21D2
ENSSSCG00000011819
ENSG00000180611
Mab-21 domain containing 2
Tissue enhanced
Detected in all
lens:
36.7
MBNL3
ENSSSCG00000012676
ENSG00000076770
Muscleblind-like protein 3
Tissue enhanced
Detected in many
liver:
71.8
male glands:
45.2
testis:
55.3
MBOAT1
ENSSSCG00000001078
ENSG00000172197
Membrane bound O-acyltransferase domain containing 1
Tissue enriched
Detected in many
lens:
111.9
MBOAT2
ENSSSCG00000023539
ENSG00000143797
Membrane bound O-acyltransferase domain containing 2
Tissue enhanced
Detected in all
choroid plexus:
38.6
MCF2L
ENSSSCG00000021158
ENSG00000126217
MCF.2 cell line derived transforming sequence like
Tissue enhanced
Detected in many
male glands:
53.7
salivary gland:
43.8
stomach:
60.7
MCL1
ENSSSCG00000039314
ENSG00000143384
MCL1, BCL2 family apoptosis regulator
Low tissue specificity
Detected in all
MCM6
ENSSSCG00000035564
ENSG00000076003
Minichromosome maintenance complex component 6
Tissue enhanced
Detected in all
lymphoid tissue:
38.8
MCRIP2
ENSSSCG00000007995
ENSG00000172366
MAPK regulated corepressor interacting protein 2
Tissue enhanced
Detected in all
adrenal gland:
83.0
heart:
78.4
male glands:
94.2
skeletal muscle:
67.4
MCTP2
ENSSSCG00000002257
ENSG00000140563
Multiple C2 and transmembrane domain containing 2
Tissue enhanced
Detected in many
retina:
37.2
MCU
ENSSSCG00000010290
ENSG00000156026
Mitochondrial calcium uniporter
Low tissue specificity
Detected in all
MCUB
ENSSSCG00000009141
ENSG00000005059
Mitochondrial calcium uniporter dominant negative beta subunit
Tissue enhanced
Detected in all
lens:
76.8
MDFIC
ENSSSCG00000021885
ENSG00000135272
MyoD family inhibitor domain containing
Low tissue specificity
Detected in many
MDGA2
ENSSSCG00000005002
ENSG00000139915
MAM domain containing glycosylphosphatidylinositol anchor 2
Tissue enhanced
Detected in many
brain:
17.1
lens:
37.4
retina:
18.1
thyroid gland:
22.6
MDH2
ENSSSCG00000025486
ENSG00000146701
Malate dehydrogenase, mitochondrial
Tissue enhanced
Detected in all
heart:
114.6
skeletal muscle:
108.7
MDK
ENSSSCG00000013260
ENSG00000110492
Midkine precursor
Low tissue specificity
Detected in all
ME2
ENSSSCG00000004522
ENSG00000082212
Malic enzyme 2
Low tissue specificity
Detected in all
MECOM
ENSSSCG00000011743
ENSG00000085276
MDS1 and EVI1 complex locus
Tissue enhanced
Detected in many
thyroid gland:
67.1
MED11
ENSSSCG00000017919
ENSG00000161920
Mediator of RNA polymerase II transcription subunit 11
Low tissue specificity
Detected in all
MED21
ENSSSCG00000000552
ENSG00000152944
Mediator of RNA polymerase II transcription subunit 21
Low tissue specificity
Detected in all
MEIG1
ENSSSCG00000034119
ENSG00000197889
Meiosis/spermiogenesis associated 1
Tissue enriched
Detected in many
testis:
49.3
MEIS2
ENSSSCG00000004795
ENSG00000134138
Meis homeobox 2
Tissue enhanced
Detected in many
brain:
76.8
cervix:
58.1
MERTK
ENSSSCG00000008103
ENSG00000153208
MER proto-oncogene, tyrosine kinase
Low tissue specificity
Detected in all
MEST
ENSSSCG00000016554
ENSG00000106484
Mesoderm-specific transcript homolog protein precursor
Tissue enhanced
Detected in all
adrenal gland:
35.8
pituitary gland:
86.2
MET
ENSSSCG00000024351
ENSG00000105976
Hepatocyte growth factor receptor
Tissue enhanced
Detected in many
thyroid gland:
33.5
METRNL
ENSSSCG00000017137
ENSG00000176845
Meteorin like, glial cell differentiation regulator
Tissue enhanced
Detected in many
cartilage:
67.1
METTL21A
ENSSSCG00000036466
ENSG00000144401
Methyltransferase like 21A
Low tissue specificity
Detected in all
METTL24
ENSSSCG00000004402
ENSG00000053328
Methyltransferase like 24
Tissue enhanced
Detected in all
male glands:
79.5
MFAP3L
ENSSSCG00000009709
ENSG00000198948
Microfibril associated protein 3 like
Tissue enhanced
Detected in many
brain:
24.9
kidney:
38.9
skin:
23.6
MFAP4
ENSSSCG00000036007
ENSG00000166482
Microfibril associated protein 4
Low tissue specificity
Detected in many
MFF
ENSSSCG00000031572
Mitochondrial fission factor
Low tissue specificity
Detected in all
MFSD1
ENSSSCG00000026018
ENSG00000118855
Major facilitator superfamily domain containing 1
Low tissue specificity
Detected in all
MFSD4A
ENSSSCG00000021487
ENSG00000174514
Major facilitator superfamily domain containing 4A
Tissue enhanced
Detected in many
male glands:
45.0
salivary gland:
44.8
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