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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
LMBRD1
ENSSSCG00000004272
ENSG00000168216
LMBR1 domain containing 1
Tissue enhanced
Detected in all
brain:
38.6
LMBRD2
ENSSSCG00000016834
ENSG00000164187
LMBR1 domain containing 2
Low tissue specificity
Detected in all
LMNTD2
ENSSSCG00000030137
ENSG00000185522
Lamin tail domain containing 2
Tissue enhanced
Detected in many
epididymis:
11.5
testis:
33.9
LMO2
ENSSSCG00000013307
ENSG00000135363
LIM domain only 2
Low tissue specificity
Detected in many
LMO7
ENSSSCG00000040184
ENSG00000136153
LIM domain 7
Tissue enhanced
Detected in many
heart:
81.5
LNX1
ENSSSCG00000008838
ENSG00000072201
Ligand of numb-protein X 1
Tissue enhanced
Detected in many
brain:
26.7
male glands:
27.7
LNX2
ENSSSCG00000009308
ENSG00000139517
Ligand of numb-protein X 2
Low tissue specificity
Detected in all
LONRF3
ENSSSCG00000012631
ENSG00000175556
LON peptidase N-terminal domain and ring finger 3
Low tissue specificity
Detected in all
LPAR2
ENSSSCG00000013932
ENSG00000064547
Lysophosphatidic acid receptor 2
Tissue enhanced
Detected in many
male glands:
16.3
stomach:
21.5
LPIN1
ENSSSCG00000008624
ENSG00000134324
Phosphatidate phosphatase LPIN1
Tissue enhanced
Detected in all
adipose tissue:
75.1
LPIN2
ENSSSCG00000038494
ENSG00000101577
Phosphatidate phosphatase LPIN2
Tissue enhanced
Detected in all
liver:
56.1
LRCH1
ENSSSCG00000009408
ENSG00000136141
Leucine rich repeats and calponin homology domain containing 1
Low tissue specificity
Detected in all
LRFN3
ENSSSCG00000002927
ENSG00000126243
Leucine rich repeat and fibronectin type III domain containing 3
Tissue enhanced
Detected in many
brain:
16.3
LRFN4
ENSSSCG00000039360
ENSG00000173621
Leucine rich repeat and fibronectin type III domain containing 4
Tissue enhanced
Detected in many
adipose tissue:
35.7
LRIG3
ENSSSCG00000000455
ENSG00000139263
Leucine rich repeats and immunoglobulin like domains 3
Low tissue specificity
Detected in many
LRP2
ENSSSCG00000040746
ENSG00000081479
LDL receptor related protein 2
Tissue enriched
Detected in many
kidney:
179.2
LRP4
ENSSSCG00000013248
ENSG00000134569
LDL receptor related protein 4
Tissue enhanced
Detected in many
skin:
40.7
small intestine:
32.8
LRPPRC
ENSSSCG00000008452
ENSG00000138095
Leucine rich pentatricopeptide repeat containing
Low tissue specificity
Detected in all
LRRC17
ENSSSCG00000036452
ENSG00000128606
Leucine rich repeat containing 17
Tissue enhanced
Detected in many
heart:
29.1
male glands:
28.8
synovial tissue:
26.6
LRRC2
ENSSSCG00000026945
ENSG00000163827
Leucine-rich repeat-containing protein 2
Group enriched
Detected in many
heart:
70.2
skeletal muscle:
50.1
LRRC26
ENSSSCG00000032509
ENSG00000184709
Leucine rich repeat containing 26
Tissue enriched
Detected in many
male glands:
160.2
LRRC3B
ENSSSCG00000011216
ENSG00000179796
Leucine rich repeat containing 3B
Tissue enhanced
Detected in many
brain:
16.9
male glands:
39.8
LRRC4
ENSSSCG00000016589
ENSG00000128594
Leucine rich repeat containing 4
Tissue enhanced
Detected in all
brain:
32.3
LRRC58
ENSSSCG00000034616
ENSG00000163428
Leucine rich repeat containing 58
Low tissue specificity
Detected in all
LRRC6
ENSSSCG00000005952
ENSG00000129295
Protein tilB homolog
Tissue enhanced
Detected in all
fallopian tube:
22.4
testis:
35.1
LRRC74B
ENSSSCG00000010100
ENSG00000187905
Leucine rich repeat containing 74B
Low tissue specificity
Detected in all
LRRC75B
ENSSSCG00000010057
ENSG00000178026
Leucine rich repeat containing 75B
Tissue enhanced
Detected in many
lens:
17.5
male glands:
13.8
LRRK2
ENSSSCG00000000784
ENSG00000188906
Leucine-rich repeat serine/threonine-protein kinase 2
Tissue enhanced
Detected in all
lymphoid tissue:
45.3
LSM1
ENSSSCG00000039058
ENSG00000175324
LSM1 homolog, mRNA degradation associated
Low tissue specificity
Detected in all
LSM4
ENSSSCG00000034314
ENSG00000130520
LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated
Low tissue specificity
Detected in all
LSM6
ENSSSCG00000035973
ENSG00000164167
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated
Low tissue specificity
Detected in all
LSM8
ENSSSCG00000021652
ENSG00000128534
LSM8 homolog, U6 small nuclear RNA associated
Low tissue specificity
Detected in all
LTA4H
ENSSSCG00000000891
ENSG00000111144
Leukotriene A-4 hydrolase
Low tissue specificity
Detected in all
LTC4S
ENSSSCG00000028488
ENSG00000213316
Leukotriene C4 synthase
Tissue enhanced
Detected in many
liver:
56.7
lymphoid tissue:
21.7
LTF
ENSSSCG00000029879
ENSG00000012223
Lactotransferrin precursor
Group enriched
Detected in many
epididymis:
127.0
upper respiratory system:
186.6
LURAP1
ENSSSCG00000026991
ENSG00000171357
Leucine rich adaptor protein 1
Tissue enhanced
Detected in many
brain:
47.6
vagus nerve:
22.9
LURAP1L
ENSSSCG00000036360
ENSG00000153714
Leucine rich adaptor protein 1 like
Low tissue specificity
Detected in many
LY75
ENSSSCG00000021956
ENSG00000054219,ENSG00000248672
Lymphocyte antigen 75 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
56.9
LY96
ENSSSCG00000006175
ENSG00000154589
Lymphocyte antigen 96
Low tissue specificity
Detected in all
LYN
ENSSSCG00000006250
ENSG00000254087
LYN proto-oncogene, Src family tyrosine kinase
Tissue enhanced
Detected in many
lymphoid tissue:
47.7
LYPD1
ENSSSCG00000035102
ENSG00000150551
Ly6/PLAUR domain-containing protein 1 precursor
Tissue enhanced
Detected in many
brain:
33.3
thyroid gland:
15.2
LYPD6B
ENSSSCG00000015677
ENSG00000150556
LY6/PLAUR domain containing 6B
Tissue enhanced
Detected in many
male glands:
19.8
pituitary gland:
30.7
skin:
18.5
LYZ
ENSSSCG00000000492
ENSG00000090382
Lysozyme C-3 precursor
Tissue enhanced
Detected in many
large intestine:
87.6
small intestine:
117.4
stomach:
158.7
LZTFL1
ENSSSCG00000011314
ENSG00000163818
Leucine zipper transcription factor like 1
Tissue enhanced
Detected in all
testis:
108.0
MAB21L1
ENSSSCG00000009351
ENSG00000180660
Mab-21 like 1
Tissue enhanced
Detected in many
lens:
45.0
retina:
44.9
MAGED1
ENSSSCG00000012318
ENSG00000179222
Melanoma-associated antigen D1
Low tissue specificity
Detected in all
MAMLD1
ENSSSCG00000012741
ENSG00000013619
Mastermind like domain containing 1
Tissue enhanced
Detected in many
epididymis:
55.4
MAN1A2
ENSSSCG00000006730
ENSG00000198162
Mannosidase alpha class 1A member 2
Low tissue specificity
Detected in all
MAN2A1
ENSSSCG00000014195
ENSG00000112893
Mannosidase alpha class 2A member 1
Low tissue specificity
Detected in all
MANF
ENSSSCG00000032914
ENSG00000145050
Mesencephalic astrocyte-derived neurotrophic factor precursor
Low tissue specificity
Detected in all
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