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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
G6PD
ENSSSCG00000025108
ENSG00000160211
Glucose-6-phosphate dehydrogenase
Low tissue specificity
Detected in all
GABARAP
ENSSSCG00000017936
ENSG00000170296
Gamma-aminobutyric acid receptor-associated protein
Low tissue specificity
Detected in all
GABARAPL2
ENSSSCG00000002707
ENSG00000034713
GABA type A receptor associated protein like 2
Tissue enhanced
Detected in all
brain:
60.7
lens:
74.1
pineal gland:
52.4
GABRB1
ENSSSCG00000035621
ENSG00000163288
Gamma-aminobutyric acid type A receptor beta1 subunit
Tissue enhanced
Detected in some
brain:
25.8
epididymis:
11.7
GABRD
ENSSSCG00000035018
ENSG00000187730
Gamma-aminobutyric acid type A receptor delta subunit
Tissue enhanced
Detected in some
brain:
30.7
esophagus:
8.3
male glands:
16.6
GADD45B
ENSSSCG00000022689
ENSG00000099860
Growth arrest and DNA damage inducible beta
Low tissue specificity
Detected in all
GADD45G
ENSSSCG00000035249
ENSG00000130222
Growth arrest and DNA damage-inducible protein GADD45 gamma
Tissue enhanced
Detected in many
gallbladder:
38.0
GAL3ST1
ENSSSCG00000010009
ENSG00000128242
Galactosylceramide sulfotransferase
Tissue enhanced
Detected in many
brain:
27.1
kidney:
20.4
vagus nerve:
23.2
GALE
ENSSSCG00000027827
ENSG00000117308
UDP-galactose-4-epimerase
Tissue enhanced
Detected in all
male glands:
50.1
stomach:
34.9
GALNT12
ENSSSCG00000005379
ENSG00000119514
Polypeptide N-acetylgalactosaminyltransferase 12
Tissue enhanced
Detected in many
male glands:
101.5
stomach:
29.1
GALNT2
ENSSSCG00000010185
ENSG00000143641
Polypeptide N-acetylgalactosaminyltransferase 2
Tissue enhanced
Detected in all
male glands:
70.3
GALNT3
ENSSSCG00000015907
ENSG00000115339
Polypeptide N-acetylgalactosaminyltransferase 3
Tissue enhanced
Detected in many
male glands:
44.6
testis:
29.6
GALNT5
ENSSSCG00000026146
ENSG00000136542
Polypeptide N-acetylgalactosaminyltransferase 5
Tissue enhanced
Detected in many
esophagus:
19.6
salivary gland:
22.7
GALNT7
ENSSSCG00000009705
ENSG00000109586
Polypeptide N-acetylgalactosaminyltransferase 7
Tissue enhanced
Detected in many
small intestine:
42.5
stomach:
42.4
GAS2L1
ENSSSCG00000025564
ENSG00000185340
GAS2-like protein 1
Low tissue specificity
Detected in all
GAS2L2
ENSSSCG00000039395
ENSG00000270765
Growth arrest specific 2 like 2
Tissue enhanced
Detected in many
fallopian tube:
32.0
kidney:
15.2
upper respiratory system:
15.7
GAS6
ENSSSCG00000009565
ENSG00000183087
Growth arrest-specific protein 6 precursor
Low tissue specificity
Detected in many
GAS7
ENSSSCG00000039056
ENSG00000007237
Growth arrest specific 7
Tissue enhanced
Detected in all
vagus nerve:
87.1
GAS8
ENSSSCG00000002633
ENSG00000141013
Growth arrest specific 8
Low tissue specificity
Detected in all
GATA1
ENSSSCG00000027237
ENSG00000102145
Erythroid transcription factor
Low tissue specificity
Detected in many
GATA2
ENSSSCG00000011618
ENSG00000179348
Endothelial transcription factor GATA-2
Tissue enriched
Detected in many
male glands:
214.6
GATA3
ENSSSCG00000011125
ENSG00000107485
Trans-acting T-cell-specific transcription factor GATA-3
Tissue enhanced
Detected in many
kidney:
50.6
male glands:
129.9
skin:
97.0
urinary bladder:
53.3
GATM
ENSSSCG00000004672
ENSG00000171766
Glycine amidinotransferase, mitochondrial
Tissue enhanced
Detected in all
kidney:
41.3
liver:
75.6
male glands:
39.5
GBE1
ENSSSCG00000012000
ENSG00000114480
1,4-alpha-glucan branching enzyme 1
Tissue enhanced
Detected in all
cartilage:
61.9
GCNT1
ENSSSCG00000005277
ENSG00000187210
Glucosaminyl (N-acetyl) transferase 1, core 2
Tissue enhanced
Detected in many
male glands:
50.9
GCNT2
ENSSSCG00000033009
ENSG00000111846
Glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)
Low tissue specificity
Detected in all
GDA
ENSSSCG00000034919
ENSG00000119125
Guanine deaminase
Tissue enriched
Detected in some
brain:
32.3
GDF7
ENSSSCG00000028931
ENSG00000143869
Growth differentiation factor 7
Tissue enhanced
Detected in some
cervix:
34.2
ductus deferens:
10.1
male glands:
25.3
upper respiratory system:
10.6
GFPT1
ENSSSCG00000008339
ENSG00000198380
Glutamine--fructose-6-phosphate aminotransferase
Tissue enriched
Detected in all
male glands:
198.6
GGACT
ENSSSCG00000009523
ENSG00000134864
Gamma-glutamylamine cyclotransferase
Tissue enhanced
Detected in all
kidney:
38.1
GINM1
ENSSSCG00000030067
ENSG00000055211
Glycoprotein integral membrane 1
Tissue enhanced
Detected in all
male glands:
74.3
GIPR
ENSSSCG00000021053
ENSG00000010310
Gastric inhibitory polypeptide receptor
Tissue enhanced
Detected in many
esophagus:
13.4
male glands:
10.1
stomach:
15.6
GJA1
ENSSSCG00000004241
ENSG00000152661
Gap junction alpha-1 protein
Tissue enhanced
Detected in many
skin:
144.1
GJB1
ENSSSCG00000012394
ENSG00000169562
Gap junction protein beta 1
Tissue enhanced
Detected in many
epididymis:
101.6
liver:
97.0
male glands:
100.9
GJB2
ENSSSCG00000031936
ENSG00000165474
Gap junction protein beta 2
Group enriched
Detected in many
cornea:
90.1
male glands:
37.5
mouth:
41.1
skin:
52.8
GJB3
ENSSSCG00000038677
ENSG00000188910
Gap junction protein beta 3
Tissue enhanced
Detected in many
cornea:
19.2
male glands:
29.8
upper respiratory system:
19.2
GLA
ENSSSCG00000038423
ENSG00000102393
Alpha-galactosidase A
Tissue enhanced
Detected in all
ovary:
35.6
GLB1
ENSSSCG00000024119
ENSG00000170266
Galactosidase beta 1
Tissue enhanced
Detected in all
male glands:
56.2
GLB1L2
ENSSSCG00000015258
ENSG00000149328
Galactosidase beta 1 like 2
Group enriched
Detected in many
epididymis:
120.8
thyroid gland:
84.9
GLCCI1
ENSSSCG00000015345
ENSG00000106415
Glucocorticoid induced 1
Tissue enhanced
Detected in all
lymphoid tissue:
47.4
GLIS3
ENSSSCG00000005224
ENSG00000107249
GLIS family zinc finger 3
Tissue enhanced
Detected in many
male glands:
75.0
GLRA3
ENSSSCG00000009698
ENSG00000145451
Glycine receptor alpha 3
Group enriched
Detected in some
epididymis:
55.6
male glands:
41.9
GLRA4
ENSSSCG00000012535
ENSG00000188828
Glycine receptor alpha 4
Low tissue specificity
Detected in all
GLRB
ENSSSCG00000032722
ENSG00000109738
Glycine receptor subunit beta precursor
Tissue enhanced
Detected in all
brain:
18.7
GLT8D1
ENSSSCG00000011448
ENSG00000016864
Glycosyltransferase 8 domain containing 1
Low tissue specificity
Detected in all
GM2A
ENSSSCG00000017087
ENSG00000196743
GM2 ganglioside activator
Tissue enhanced
Detected in all
ovary:
56.9
GMCL1
ENSSSCG00000008335
ENSG00000087338
Germ cell-less, spermatogenesis associated 1
Tissue enhanced
Detected in all
testis:
80.9
GMDS
ENSSSCG00000000994
ENSG00000112699
GDP-mannose 4,6-dehydratase
Tissue enhanced
Detected in many
male glands:
81.3
GMFB
ENSSSCG00000026294
ENSG00000197045
Glia maturation factor beta
Tissue enhanced
Detected in all
brain:
40.7
GMIP
ENSSSCG00000013931
ENSG00000089639
GEM interacting protein
Tissue enhanced
Detected in many
lymphoid tissue:
28.2
stomach:
33.9
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