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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GMPR
ENSSSCG00000001064
ENSG00000137198
Guanosine monophosphate reductase
Tissue enhanced
Detected in all
heart:
44.1
skeletal muscle:
71.7
GNAI3
ENSSSCG00000006824
ENSG00000065135
Guanine nucleotide-binding protein G(k) subunit alpha
Low tissue specificity
Detected in all
GNAL
ENSSSCG00000022163
ENSG00000141404
G protein subunit alpha L
Tissue enriched
Detected in some
brain:
67.5
GNAO1
ENSSSCG00000034192
ENSG00000087258
G protein subunit alpha o1
Tissue enhanced
Detected in many
brain:
62.7
retina:
26.2
GNAZ
ENSSSCG00000010046
ENSG00000128266
G protein subunit alpha z
Tissue enhanced
Detected in many
brain:
36.7
retina:
20.1
GNB3
ENSSSCG00000000682
ENSG00000111664
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3
Group enriched
Detected in many
pineal gland:
102.6
retina:
90.3
GNE
ENSSSCG00000037468
ENSG00000159921
Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase
Tissue enriched
Detected in all
male glands:
122.3
GNG10
ENSSSCG00000037964
ENSG00000242616
G protein subunit gamma 10
Low tissue specificity
Detected in all
GNG2
ENSSSCG00000028092
ENSG00000186469
G protein subunit gamma 2
Tissue enhanced
Detected in many
brain:
49.6
male glands:
43.2
GNPTAB
ENSSSCG00000000862
ENSG00000111670
N-acetylglucosamine-1-phosphate transferase alpha and beta subunits
Low tissue specificity
Detected in all
GOLGA5
ENSSSCG00000002455
ENSG00000066455
Golgin A5
Tissue enhanced
Detected in all
male glands:
64.2
GOLM1
ENSSSCG00000010955
ENSG00000135052
Golgi membrane protein 1
Tissue enhanced
Detected in all
small intestine:
76.5
stomach:
88.5
GOLPH3L
ENSSSCG00000038558
ENSG00000143457
Golgi phosphoprotein 3 like
Tissue enhanced
Detected in all
male glands:
91.6
GOLT1B
ENSSSCG00000000579
ENSG00000111711
Vesicle transport protein GOT1B
Low tissue specificity
Detected in all
GORAB
ENSSSCG00000006280
ENSG00000120370
Golgin, RAB6 interacting
Tissue enhanced
Detected in all
male glands:
78.3
GOT1
ENSSSCG00000010537
ENSG00000120053
Aspartate aminotransferase, cytoplasmic
Tissue enhanced
Detected in all
heart:
69.7
skeletal muscle:
62.1
GPAM
ENSSSCG00000010631
ENSG00000119927
Glycerol-3-phosphate acyltransferase, mitochondrial
Tissue enhanced
Detected in all
epididymis:
107.2
liver:
36.7
GPCPD1
ENSSSCG00000007043
ENSG00000125772
Glycerophosphocholine phosphodiesterase 1
Tissue enhanced
Detected in all
thyroid gland:
57.9
GPD1L
ENSSSCG00000021977
ENSG00000152642
Glycerol-3-phosphate dehydrogenase 1 like
Tissue enhanced
Detected in all
male glands:
70.5
GPN3
ENSSSCG00000009820
ENSG00000111231
GPN-loop GTPase 3
Low tissue specificity
Detected in all
GPR160
ENSSSCG00000035883
ENSG00000173890
G protein-coupled receptor 160
Tissue enhanced
Detected in many
large intestine:
20.6
lens:
69.3
GPR180
ENSSSCG00000009492
ENSG00000152749
G protein-coupled receptor 180
Low tissue specificity
Detected in all
GPR39
ENSSSCG00000015707
ENSG00000183840
G protein-coupled receptor 39
Tissue enhanced
Detected in many
liver:
28.1
stomach:
25.8
GPR4
ENSSSCG00000037184
ENSG00000177464
G-protein coupled receptor 4
Tissue enhanced
Detected in many
mesothelial tissue:
38.0
GPR65
ENSSSCG00000021146
ENSG00000140030
G protein-coupled receptor 65
Tissue enhanced
Detected in many
lymphoid tissue:
18.7
GPRC5B
ENSSSCG00000007864
ENSG00000167191
G protein-coupled receptor class C group 5 member B
Tissue enhanced
Detected in all
brain:
75.1
lens:
84.2
ovary:
63.1
GPRC5C
ENSSSCG00000040989
ENSG00000170412
G protein-coupled receptor class C group 5 member C
Tissue enhanced
Detected in all
stomach:
56.2
GPRIN3
ENSSSCG00000039821
ENSG00000185477
GPRIN family member 3
Tissue enhanced
Detected in many
brain:
34.2
lymphoid tissue:
35.7
pineal gland:
34.6
GPSM2
ENSSSCG00000021440
ENSG00000121957
G protein signaling modulator 2
Tissue enhanced
Detected in all
brain:
32.4
GPT2
ENSSSCG00000002847
ENSG00000166123
Glutamic--pyruvic transaminase 2
Tissue enhanced
Detected in many
brain:
43.4
kidney:
59.2
liver:
39.4
GPX3
ENSSSCG00000036438
ENSG00000211445
Glutathione peroxidase 3 precursor
Group enriched
Detected in many
kidney:
521.1
ovary:
496.9
GPX5
ENSSSCG00000001214
ENSG00000224586
Epididymal secretory glutathione peroxidase
Tissue enriched
Detected in many
epididymis:
80.6
GPX6
ENSSSCG00000001213
ENSG00000198704
Glutathione peroxidase 6 precursor
Tissue enriched
Detected in some
male glands:
109.1
GPX7
ENSSSCG00000038094
ENSG00000116157
Glutathione peroxidase 7
Low tissue specificity
Detected in many
GPX8
ENSSSCG00000021973
ENSG00000164294
Glutathione peroxidase 8 (putative)
Tissue enhanced
Detected in many
male glands:
42.8
ovary:
33.4
GREM1
ENSSSCG00000033657
ENSG00000166923
Gremlin 1, DAN family BMP antagonist
Tissue enhanced
Detected in many
cartilage:
38.7
gallbladder:
38.9
kidney:
37.6
small intestine:
50.0
smooth muscle:
39.8
GRHL1
ENSSSCG00000026068
ENSG00000134317
Grainyhead like transcription factor 1
Tissue enhanced
Detected in many
mouth:
24.3
salivary gland:
28.2
skin:
42.7
GRHL3
ENSSSCG00000003539
ENSG00000158055
Grainyhead like transcription factor 3
Tissue enhanced
Detected in many
mouth:
38.4
urinary bladder:
24.1
GRIK4
ENSSSCG00000015131
ENSG00000149403
Glutamate ionotropic receptor kainate type subunit 4
Tissue enhanced
Detected in many
brain:
16.4
male glands:
15.3
GRIN1
ENSSSCG00000039834
ENSG00000176884
Glutamate ionotropic receptor NMDA type subunit 1
Group enriched
Detected in some
brain:
48.8
male glands:
23.9
GRIN2C
ENSSSCG00000023151
ENSG00000161509
Glutamate ionotropic receptor NMDA type subunit 2C
Group enriched
Detected in some
brain:
31.0
male glands:
35.5
GSE1
ENSSSCG00000002664
ENSG00000131149
Gse1 coiled-coil protein
Tissue enhanced
Detected in all
lymphoid tissue:
79.7
GSR
ENSSSCG00000015844
ENSG00000104687
Glutathione-disulfide reductase
Tissue enhanced
Detected in all
large intestine:
60.8
GSTA1
ENSSSCG00000002623
ENSG00000182793,ENSG00000243955,ENSG00000244067
Tissue enhanced
Detected in many
liver:
176.9
male glands:
65.1
ovary:
103.3
small intestine:
67.1
GSTCD
ENSSSCG00000023548
ENSG00000138780
Glutathione S-transferase C-terminal domain containing
Low tissue specificity
Detected in all
GSTP1
ENSSSCG00000032003
ENSG00000084207
Glutathione S-transferase pi 1
Tissue enhanced
Detected in all
lens:
170.7
GTF2H5
ENSSSCG00000024019
ENSG00000272047
General transcription factor IIH subunit 5
Low tissue specificity
Detected in all
GTF2IRD1
ENSSSCG00000007720
ENSG00000006704
GTF2I repeat domain containing 1
Low tissue specificity
Detected in all
GUCY1A1
ENSSSCG00000008866
ENSG00000164116
Guanylate cyclase soluble subunit alpha-3
Low tissue specificity
Detected in many
GUCY1B1
ENSSSCG00000008870
ENSG00000061918
Guanylate cyclase soluble subunit beta-1
Tissue enhanced
Detected in many
pineal gland:
40.0
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