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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
FGD2
ENSSSCG00000001572
ENSG00000146192
FYVE, RhoGEF and PH domain containing 2
Tissue enhanced
Detected in many
lymphoid tissue:
64.4
FGD3
ENSSSCG00000028185
ENSG00000127084
FYVE, RhoGEF and PH domain containing 3
Tissue enhanced
Detected in many
lymphoid tissue:
40.5
small intestine:
21.3
stomach:
32.6
FGD5
ENSSSCG00000011598
ENSG00000154783
FYVE, RhoGEF and PH domain containing 5
Low tissue specificity
Detected in many
FGFR3
ENSSSCG00000030827
ENSG00000068078
Fibroblast growth factor receptor 3
Tissue enhanced
Detected in many
lens:
40.2
male glands:
41.9
FGFRL1
ENSSSCG00000036512
ENSG00000127418
Fibroblast growth factor receptor like 1
Tissue enhanced
Detected in many
cartilage:
42.6
liver:
52.5
male glands:
35.3
FHDC1
ENSSSCG00000009011
ENSG00000137460
FH2 domain containing 1
Tissue enhanced
Detected in many
stomach:
30.2
FHIT
ENSSSCG00000035818
ENSG00000189283
Fragile histidine triad
Tissue enhanced
Detected in all
male glands:
36.6
FIBCD1
ENSSSCG00000005707
ENSG00000130720
Fibrinogen C domain containing 1
Group enriched
Detected in some
brain:
41.2
male glands:
21.0
FIGN
ENSSSCG00000034262
ENSG00000182263
Fidgetin, microtubule severing factor
Tissue enhanced
Detected in many
lens:
24.3
FILIP1L
ENSSSCG00000011972
ENSG00000168386
Filamin A interacting protein 1 like
Low tissue specificity
Detected in all
FKBP10
ENSSSCG00000017422
ENSG00000141756
Peptidyl-prolyl cis-trans isomerase FKBP10 precursor
Tissue enhanced
Detected in many
cartilage:
54.7
FKBP11
ENSSSCG00000000180
ENSG00000134285
FK506 binding protein 11
Low tissue specificity
Detected in many
FKBP3
ENSSSCG00000021217
ENSG00000100442
Peptidyl-prolyl cis-trans isomerase FKBP3
Tissue enhanced
Detected in all
lens:
67.7
skeletal muscle:
60.0
FKBP7
ENSSSCG00000015999
ENSG00000079150
FK506 binding protein 7
Tissue enhanced
Detected in all
cartilage:
51.2
FKTN
ENSSSCG00000005427
ENSG00000106692
Fukutin
Low tissue specificity
Detected in all
FLRT1
ENSSSCG00000013044
ENSG00000126500
Fibronectin leucine rich transmembrane protein 1
Tissue enhanced
Detected in many
brain:
12.6
kidney:
18.7
lymphoid tissue:
15.7
thyroid gland:
15.4
FLT1
ENSSSCG00000009320
ENSG00000102755
Fms related tyrosine kinase 1
Low tissue specificity
Detected in many
FLT4
ENSSSCG00000014007
ENSG00000037280
Fms related tyrosine kinase 4
Low tissue specificity
Detected in many
FLVCR2
ENSSSCG00000021606
ENSG00000119686
Feline leukemia virus subgroup C receptor-related protein 2
Tissue enhanced
Detected in many
liver:
25.8
lung:
43.1
FMC1
ENSSSCG00000038700
ENSG00000164898
Formation of mitochondrial complex V assembly factor 1 homolog
Low tissue specificity
Detected in all
FMNL3
ENSSSCG00000025114
ENSG00000161791
Formin like 3
Low tissue specificity
Detected in all
FN1
ENSSSCG00000016174
ENSG00000115414
Fibronectin 1
Tissue enhanced
Detected in many
adipose tissue:
168.3
male glands:
433.9
synovial tissue:
420.5
FN3K
ENSSSCG00000017131
ENSG00000167363
Fructosamine 3 kinase
Tissue enhanced
Detected in many
lens:
51.3
FNBP1
ENSSSCG00000005689
ENSG00000187239
Formin binding protein 1
Low tissue specificity
Detected in all
FNDC1
ENSSSCG00000004052
ENSG00000164694
Fibronectin type III domain containing 1
Tissue enhanced
Detected in many
dura mater:
58.1
mesothelial tissue:
57.0
synovial tissue:
45.8
FNIP1
ENSSSCG00000014269
ENSG00000217128
Folliculin interacting protein 1
Low tissue specificity
Detected in all
FOS
ENSSSCG00000002383
ENSG00000170345
Proto-oncogene c-Fos
Tissue enhanced
Detected in many
aorta:
123.9
synovial tissue:
121.3
FOSB
ENSSSCG00000031616
ENSG00000125740
FosB proto-oncogene, AP-1 transcription factor subunit
Tissue enhanced
Detected in many
aorta:
129.4
cartilage:
83.1
synovial tissue:
89.9
FOXA1
ENSSSCG00000037634
ENSG00000129514
Forkhead box A1
Tissue enhanced
Detected in many
breast:
20.5
esophagus:
19.7
male glands:
38.3
upper respiratory system:
22.5
FOXA2
ENSSSCG00000007114
ENSG00000125798
Forkhead box A2
Tissue enhanced
Detected in many
cartilage:
20.4
liver:
22.2
male glands:
33.3
stomach:
37.4
FOXF1
ENSSSCG00000038460
ENSG00000103241
Forkhead box F1
Tissue enhanced
Detected in many
gallbladder:
34.5
smooth muscle:
40.2
urinary bladder:
40.6
FOXN2
ENSSSCG00000029593
ENSG00000170802
Forkhead box N2
Low tissue specificity
Detected in all
FOXP2
ENSSSCG00000016639
ENSG00000128573
Forkhead box protein P2
Tissue enhanced
Detected in many
smooth muscle:
59.6
FRAT2
ENSSSCG00000038904
ENSG00000181274
FRAT2, WNT signaling pathway regulator
Low tissue specificity
Detected in all
FREM2
ENSSSCG00000009364
ENSG00000150893
FRAS1 related extracellular matrix protein 2
Tissue enhanced
Detected in many
choroid plexus:
53.6
kidney:
23.0
thyroid gland:
23.4
FRK
ENSSSCG00000004434
ENSG00000111816
Fyn related Src family tyrosine kinase
Tissue enhanced
Detected in many
male glands:
15.9
upper respiratory system:
14.2
FRMD4A
ENSSSCG00000011056
ENSG00000151474
FERM domain containing 4A
Low tissue specificity
Detected in all
FRMD5
ENSSSCG00000004694
ENSG00000171877
FERM domain containing 5
Tissue enhanced
Detected in many
brain:
33.6
ductus deferens:
26.5
epididymis:
22.0
male glands:
32.1
FRRS1L
ENSSSCG00000038824
ENSG00000260230
Ferric chelate reductase 1 like
Tissue enriched
Detected in many
brain:
27.5
FSCN2
ENSSSCG00000026155
ENSG00000186765
Fascin actin-bundling protein 2, retinal
Tissue enhanced
Detected in many
choroid plexus:
22.9
pineal gland:
21.6
retina:
57.2
FTL
ENSSSCG00000003153
ENSG00000087086
Ferritin light chain
Tissue enhanced
Detected in all
lens:
546.5
FUNDC1
ENSSSCG00000012258
ENSG00000069509
FUN14 domain containing 1
Low tissue specificity
Detected in all
FUOM
ENSSSCG00000010791
ENSG00000148803
Fucose mutarotase
Tissue enhanced
Detected in all
liver:
42.5
male glands:
43.9
FURIN
ENSSSCG00000001817
ENSG00000140564
Furin, paired basic amino acid cleaving enzyme
Tissue enhanced
Detected in all
epididymis:
105.6
FUT4
ENSSSCG00000014958
ENSG00000196371
Fucosyltransferase 4
Tissue enhanced
Detected in many
stomach:
57.6
FUT8
ENSSSCG00000002283
ENSG00000033170
Alpha-(1,6)-fucosyltransferase
Tissue enhanced
Detected in all
lymphoid tissue:
51.9
vagus nerve:
63.1
FYN
ENSSSCG00000004421
ENSG00000010810
Tyrosine-protein kinase Fyn
Low tissue specificity
Detected in all
FZD3
ENSSSCG00000009679
ENSG00000104290
Frizzled class receptor 3
Tissue enhanced
Detected in many
brain:
25.7
FZD5
ENSSSCG00000016140
ENSG00000163251
Frizzled class receptor 5
Tissue enhanced
Detected in all
large intestine:
44.9
liver:
40.2
FZD6
ENSSSCG00000006052
ENSG00000164930
Frizzled-6 precursor
Low tissue specificity
Detected in all
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