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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
FAM118B
ENSSSCG00000025806
ENSG00000197798
Family with sequence similarity 118 member B
Low tissue specificity
Detected in all
FAM122B
ENSSSCG00000012685
ENSG00000156504
Family with sequence similarity 122B
Low tissue specificity
Detected in all
FAM124A
ENSSSCG00000029598
ENSG00000150510
Family with sequence similarity 124 member A
Tissue enhanced
Detected in all
lens:
40.0
FAM126A
ENSSSCG00000015386
ENSG00000122591
Family with sequence similarity 126 member A
Low tissue specificity
Detected in all
FAM129A
ENSSSCG00000015567
ENSG00000135842
Protein Niban
Tissue enhanced
Detected in many
male glands:
84.4
salivary gland:
83.6
smooth muscle:
60.1
FAM133A
ENSSSCG00000031033
ENSG00000179083
Family with sequence similarity 133 member A
Tissue enhanced
Detected in many
brain:
14.6
pituitary gland:
13.3
FAM149A
ENSSSCG00000015802
ENSG00000109794
Family with sequence similarity 149 member A
Tissue enriched
Detected in many
lens:
125.8
FAM171A2
ENSSSCG00000017356
ENSG00000161682
Family with sequence similarity 171 member A2
Tissue enhanced
Detected in many
kidney:
29.7
male glands:
22.8
FAM174B
ENSSSCG00000002265
ENSG00000185442
Family with sequence similarity 174 member B
Tissue enhanced
Detected in many
male glands:
122.3
FAM177B
ENSSSCG00000010837
ENSG00000197520
Family with sequence similarity 177 member B
Tissue enhanced
Detected in many
esophagus:
29.1
male glands:
76.7
FAM181B
ENSSSCG00000014897
ENSG00000182103
Family with sequence similarity 181 member B
Tissue enriched
Detected in many
brain:
31.5
FAM189A2
ENSSSCG00000005249
ENSG00000135063
Family with sequence similarity 189 member A2
Tissue enriched
Detected in many
thyroid gland:
101.3
FAM210B
ENSSSCG00000007492
ENSG00000124098
Protein FAM210B
Low tissue specificity
Detected in all
FAM213A
ENSSSCG00000010340
ENSG00000122378
Redox-regulatory protein FAM213A isoform 2
Low tissue specificity
Detected in all
FAM217B
ENSSSCG00000007531
ENSG00000196227
Family with sequence similarity 217 member B
Low tissue specificity
Detected in all
FAM234B
ENSSSCG00000000619
ENSG00000084444
Protein FAM234B
Tissue enhanced
Detected in all
brain:
31.8
male glands:
31.5
FAM240A
ENSSSCG00000032551
ENSG00000283473
Family with sequence similarity 240 member A
Tissue enhanced
Detected in many
fallopian tube:
17.7
FAM3B
ENSSSCG00000012075
ENSG00000183844
Family with sequence similarity 3 member B
Tissue enhanced
Detected in many
gallbladder:
30.3
large intestine:
31.3
stomach:
102.7
FAM3C
ENSSSCG00000016616
ENSG00000196937
Family with sequence similarity 3 member C
Tissue enhanced
Detected in all
male glands:
75.3
FAM3D
ENSSSCG00000025529
ENSG00000198643
Family with sequence similarity 3 member D
Tissue enhanced
Detected in some
epididymis:
46.8
large intestine:
56.0
small intestine:
29.8
stomach:
39.6
FAM46C
ENSSSCG00000006729
ENSG00000183508
Protein FAM46C
Tissue enhanced
Detected in all
lens:
86.2
male glands:
78.3
testis:
66.6
FAM49A
ENSSSCG00000008617
ENSG00000197872
Family with sequence similarity 49 member A
Tissue enhanced
Detected in all
lymphoid tissue:
42.3
FAM57A
ENSSSCG00000017810
ENSG00000167695
Family with sequence similarity 57 member A
Tissue enhanced
Detected in all
breast:
19.9
testis:
33.0
FAM71D
ENSSSCG00000002286
ENSG00000172717
Family with sequence similarity 71 member D
Tissue enriched
Detected in some
testis:
102.6
FAM78B
ENSSSCG00000006321
ENSG00000188859
Family with sequence similarity 78 member B
Tissue enhanced
Detected in many
heart:
27.4
ovary:
39.3
FAM83E
ENSSSCG00000025975
ENSG00000105523
Family with sequence similarity 83 member E
Tissue enhanced
Detected in some
large intestine:
22.8
stomach:
63.6
FAM83G
ENSSSCG00000018047
ENSG00000188522
Family with sequence similarity 83 member G
Tissue enhanced
Detected in many
cornea:
18.5
lens:
26.1
FAM84B
ENSSSCG00000005967
ENSG00000168672
Family with sequence similarity 84 member B
Tissue enhanced
Detected in all
male glands:
92.2
FANCA
ENSSSCG00000024687
ENSG00000187741
Fanconi anemia complementation group A
Low tissue specificity
Detected in all
FANCL
ENSSSCG00000008394
ENSG00000115392
Fanconi anemia complementation group L
Low tissue specificity
Detected in all
FAR1
ENSSSCG00000021170
ENSG00000197601
Fatty acyl-CoA reductase 1
Tissue enhanced
Detected in all
male glands:
76.8
FAR2
ENSSSCG00000000541
ENSG00000064763
Fatty acyl-CoA reductase 2
Tissue enhanced
Detected in all
pineal gland:
29.7
FARP2
ENSSSCG00000016368
ENSG00000006607
FERM, ARH/RhoGEF and pleckstrin domain protein 2
Tissue enhanced
Detected in all
salivary gland:
46.4
FASN
ENSSSCG00000029944
ENSG00000169710
Fatty acid synthase
Tissue enhanced
Detected in all
adipose tissue:
297.2
aorta:
259.1
bone marrow:
111.4
FASTKD2
ENSSSCG00000016134
ENSG00000118246
FAST kinase domains 2
Low tissue specificity
Detected in all
FBL
ENSSSCG00000030510
ENSG00000105202
Fibrillarin
Low tissue specificity
Detected in all
FBLIM1
ENSSSCG00000003465
ENSG00000162458
Filamin binding LIM protein 1
Low tissue specificity
Detected in all
FBLN5
ENSSSCG00000002444
ENSG00000140092
Fibulin 5
Tissue enhanced
Detected in many
ovary:
46.7
FBXL3
ENSSSCG00000009472
ENSG00000005812
F-box and leucine rich repeat protein 3
Low tissue specificity
Detected in all
FBXO2
ENSSSCG00000025667
ENSG00000116661
F-box protein 2
Tissue enhanced
Detected in many
brain:
24.6
ductus deferens:
16.4
pineal gland:
11.3
FBXO24
ENSSSCG00000025096
ENSG00000106336
F-box protein 24
Tissue enhanced
Detected in many
male glands:
25.5
testis:
36.0
FBXO3
ENSSSCG00000013308
ENSG00000110429
F-box protein 3
Low tissue specificity
Detected in all
FBXO34
ENSSSCG00000005057
ENSG00000178974
F-box only protein 34
Low tissue specificity
Detected in many
FBXO36
ENSSSCG00000016259
ENSG00000153832
F-box protein 36
Tissue enhanced
Detected in many
testis:
37.0
FBXO6
ENSSSCG00000003420
ENSG00000116663
F-box only protein 6
Low tissue specificity
Detected in all
FBXO8
ENSSSCG00000009702
ENSG00000164117
F-box protein 8
Tissue enhanced
Detected in all
male glands:
52.5
FCGBP
ENSSSCG00000027515
ENSG00000275395
Fc fragment of IgG binding protein
Tissue enriched
Detected in some
male glands:
762.8
FEM1C
ENSSSCG00000014217
ENSG00000145780
Fem-1 homolog C
Low tissue specificity
Detected in all
FERMT1
ENSSSCG00000007052
ENSG00000101311
Fermitin family member 1
Low tissue specificity
Detected in many
FGB
ENSSSCG00000008997
ENSG00000171564
Fibrinogen beta chain precursor
Tissue enriched
Detected in some
liver:
413.6
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