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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CREG1
ENSSSCG00000006308
ENSG00000143162
Cellular repressor of E1A stimulated genes 1
Tissue enhanced
Detected in all
male glands:
80.5
testis:
86.7
CREM
ENSSSCG00000011106
ENSG00000095794
CAMP responsive element modulator
Tissue enriched
Detected in all
testis:
83.2
CRHR2
ENSSSCG00000033514
ENSG00000106113
Corticotropin-releasing factor receptor 2
Low tissue specificity
Detected in all
CRIM1
ENSSSCG00000008504
ENSG00000150938
Cysteine rich transmembrane BMP regulator 1
Tissue enhanced
Detected in all
cartilage:
107.8
lens:
90.0
CRISP3
ENSSSCG00000024347
ENSG00000096006
Cysteine rich secretory protein 3
Group enriched
Detected in some
male glands:
265.0
upper respiratory system:
115.5
CRLF1
ENSSSCG00000013909
ENSG00000006016
Cytokine receptor like factor 1
Tissue enhanced
Detected in many
cornea:
37.9
penis:
22.3
CROT
ENSSSCG00000015391
ENSG00000005469
Peroxisomal carnitine O-octanoyltransferase
Tissue enriched
Detected in all
liver:
89.6
CRYBA1
ENSSSCG00000040641
ENSG00000108255
Crystallin beta A1
Tissue enriched
Detected in single
lens:
2538.5
CRYBA2
ENSSSCG00000040776
ENSG00000163499
Crystallin beta A2
Tissue enriched
Detected in single
lens:
694.3
CRYBG1
ENSSSCG00000004371
ENSG00000112297
Crystallin beta-gamma domain containing 1
Tissue enhanced
Detected in many
cornea:
55.1
mouth:
35.3
CRYM
ENSSSCG00000007849
ENSG00000103316
Crystallin mu
Tissue enhanced
Detected in many
brain:
56.3
male glands:
91.5
pituitary gland:
88.5
CSDE1
ENSSSCG00000006752
ENSG00000009307
Cold shock domain containing E1
Low tissue specificity
Detected in all
CSE1L
ENSSSCG00000025534
ENSG00000124207
Exportin-2
Low tissue specificity
Detected in all
CSF1
ENSSSCG00000037449
ENSG00000184371
Macrophage colony-stimulating factor 1 precursor
Tissue enhanced
Detected in many
synovial tissue:
59.3
CSGALNACT1
ENSSSCG00000007005
ENSG00000147408
Chondroitin sulfate N-acetylgalactosaminyltransferase 1
Tissue enhanced
Detected in many
cartilage:
57.9
CSMD2
ENSSSCG00000003622
ENSG00000121904
CUB and Sushi multiple domains 2
Tissue enhanced
Detected in many
brain:
11.1
male glands:
13.9
vagus nerve:
21.5
CSRP2
ENSSSCG00000000951
ENSG00000175183
Cysteine and glycine rich protein 2
Tissue enhanced
Detected in all
male glands:
75.8
CST6
ENSSSCG00000012960
ENSG00000175315
Cystatin E/M
Tissue enhanced
Detected in many
epididymis:
96.1
male glands:
81.3
skin:
99.4
CT83
ENSSSCG00000021942
ENSG00000204019
Cancer/testis antigen 83
Tissue enhanced
Detected in many
esophagus:
20.4
large intestine:
15.4
salivary gland:
19.7
testis:
12.8
upper respiratory system:
19.4
CTNNB1
ENSSSCG00000011274
ENSG00000168036
Catenin beta-1
Low tissue specificity
Detected in all
CTNND2
ENSSSCG00000016780
ENSG00000169862
Catenin delta 2
Tissue enhanced
Detected in many
brain:
57.2
pineal gland:
25.0
CTPS1
ENSSSCG00000003973
ENSG00000171793
CTP synthase 1
Tissue enhanced
Detected in all
lymphoid tissue:
27.8
CTSV
ENSSSCG00000011171
ENSG00000136943
Cathepsin L1 Cathepsin L1 heavy chain Cathepsin L1 light chain
Tissue enhanced
Detected in all
cornea:
126.5
liver:
80.8
CTTNBP2
ENSSSCG00000016625
ENSG00000077063
Cortactin binding protein 2
Tissue enhanced
Detected in all
kidney:
75.6
CTXN1
ENSSSCG00000036220
ENSG00000178531
Cortexin 1
Tissue enriched
Detected in some
brain:
90.5
CTXN3
ENSSSCG00000036570
ENSG00000205279
Cortexin 3
Tissue enhanced
Detected in many
brain:
23.1
dura mater:
22.3
pineal gland:
33.0
CUL9
ENSSSCG00000030196
ENSG00000112659
Cullin 9
Low tissue specificity
Detected in all
CX3CL1
ENSSSCG00000024759
ENSG00000006210
C-X3-C motif chemokine ligand 1
Tissue enhanced
Detected in many
brain:
43.8
CX3CR1
ENSSSCG00000024024
ENSG00000168329
C-X3-C motif chemokine receptor 1
Group enriched
Detected in many
brain:
43.4
pineal gland:
12.1
CXCL14
ENSSSCG00000014310
ENSG00000145824
C-X-C motif chemokine 14 precursor
Tissue enhanced
Detected in many
skin:
100.3
stomach:
67.6
urinary bladder:
72.5
CYB561D1
ENSSSCG00000006827
ENSG00000174151
Cytochrome b561 family member D1
Tissue enhanced
Detected in all
male glands:
43.6
CYB5A
ENSSSCG00000004875
ENSG00000166347
Cytochrome b5
Tissue enhanced
Detected in all
ovary:
184.6
testis:
159.0
CYB5R1
ENSSSCG00000010929
ENSG00000159348
Cytochrome b5 reductase 1
Tissue enhanced
Detected in all
heart:
24.6
skeletal muscle:
41.5
CYCS
ENSSSCG00000016714
Cytochrome c
Tissue enhanced
Detected in all
heart:
71.0
skeletal muscle:
76.2
CYGB
ENSSSCG00000017181
ENSG00000161544
Cytoglobin
Low tissue specificity
Detected in many
CYP19A1
ENSSSCG00000030168
ENSG00000137869
Aromatase 1
Tissue enriched
Detected in all
testis:
249.1
CYP26B1
ENSSSCG00000008311
ENSG00000003137
Cytochrome P450 family 26 subfamily B member 1
Tissue enhanced
Detected in many
cartilage:
68.0
penis:
20.0
skin:
17.6
CYP27A1
ENSSSCG00000016199
ENSG00000135929
Sterol 26-hydroxylase, mitochondrial
Tissue enriched
Detected in many
liver:
139.3
CYP2J34
ENSSSCG00000003825
ENSG00000134716
Cytochrome P450, family 2, subfamily J, polypeptide 34
Tissue enhanced
Detected in all
brain:
40.9
lens:
53.1
male glands:
34.2
CYP4B1
ENSSSCG00000003894
ENSG00000142973
Cytochrome P450 family 4 subfamily B member 1
Tissue enhanced
Detected in many
adipose tissue:
47.5
lung:
64.9
salivary gland:
50.4
upper respiratory system:
47.5
CYP51A1
ENSSSCG00000015311
ENSG00000001630
Lanosterol 14-alpha demethylase
Low tissue specificity
Detected in all
CYR61
ENSSSCG00000006940
ENSG00000142871
Cysteine rich angiogenic inducer 61
Tissue enhanced
Detected in many
cartilage:
155.3
CYSLTR2
ENSSSCG00000009399
ENSG00000152207
Cysteinyl leukotriene receptor 2
Low tissue specificity
Detected in all
CYTB
ENSSSCG00000018094
ENSG00000198727
Cytochrome b (mitochondrion)
Tissue enhanced
Detected in all
heart:
1273.8
CYTH3
ENSSSCG00000034768
ENSG00000008256
Cytohesin 3
Low tissue specificity
Detected in all
CYTH4
ENSSSCG00000000130
ENSG00000100055
Cytohesin-4
Tissue enhanced
Detected in many
lymphoid tissue:
30.0
stomach:
28.7
DAB2IP
ENSSSCG00000005524
ENSG00000136848
DAB2 interacting protein
Low tissue specificity
Detected in all
DACH1
ENSSSCG00000009457
ENSG00000276644
Dachshund family transcription factor 1
Low tissue specificity
Detected in many
DAD1
ENSSSCG00000002050
ENSG00000129562
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1
Tissue enhanced
Detected in all
male glands:
84.0
DAGLA
ENSSSCG00000013079
ENSG00000134780
Diacylglycerol lipase alpha
Low tissue specificity
Detected in many
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