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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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916 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SHISA3
ENSSSCG00000040147
ENSG00000178343
Shisa family member 3
Tissue enhanced
Detected in many
cartilage:
17.0
vagus nerve:
61.0
SIM2
ENSSSCG00000027179
ENSG00000159263
Single-minded family bHLH transcription factor 2
Tissue enhanced
Detected in some
esophagus:
46.7
male glands:
42.5
stomach:
44.6
SLA-DMA
ENSSSCG00000001470
ENSG00000204257
SLA-DM alpha chain precursor
Tissue enhanced
Detected in many
lymphoid tissue:
51.5
SLA-DMB
ENSSSCG00000001469
ENSG00000242574
MHC class II, DM beta precursor
Low tissue specificity
Detected in many
SLC10A2
ENSSSCG00000026317
ENSG00000125255
Ileal sodium/bile acid cotransporter
Tissue enriched
Detected in some
small intestine:
70.7
SLC12A2
ENSSSCG00000014255
ENSG00000064651
Solute carrier family 12 member 2
Tissue enriched
Detected in many
male glands:
217.5
SLC12A3
ENSSSCG00000032643
ENSG00000070915
Solute carrier family 12 member 3
Tissue enriched
Detected in single
kidney:
111.7
SLC13A2
ENSSSCG00000017763
ENSG00000007216
Solute carrier family 13 member 2
Tissue enhanced
Detected in some
gallbladder:
12.9
kidney:
56.9
small intestine:
27.1
SLC13A3
ENSSSCG00000035906
ENSG00000158296
Solute carrier family 13 member 3
Tissue enriched
Detected in some
kidney:
93.6
SLC14A1
ENSSSCG00000004492
ENSG00000141469
Solute carrier family 14 member 1 (Kidd blood group)
Tissue enhanced
Detected in all
brain:
34.6
kidney:
39.0
SLC14A2
ENSSSCG00000004491
ENSG00000132874
Solute carrier family 14 member 2
Tissue enriched
Detected in some
kidney:
79.9
SLC16A2
ENSSSCG00000029458
ENSG00000147100
Solute carrier family 16 member 2
Tissue enhanced
Detected in all
adrenal gland:
42.6
choroid plexus:
40.3
SLC16A6
ENSSSCG00000017262
ENSG00000108932
Solute carrier family 16 member 6
Tissue enriched
Detected in many
choroid plexus:
84.7
SLC17A1
ENSSSCG00000001107
ENSG00000124568
Sodium-dependent phosphate transport protein 1
Group enriched
Detected in all
kidney:
107.2
liver:
78.5
SLC17A2
ENSSSCG00000036191
ENSG00000112337
Solute carrier family 17 member 2
Group enriched
Detected in some
epididymis:
26.0
liver:
61.1
SLC19A3
ENSSSCG00000021968
ENSG00000135917
Solute carrier family 19 member 3
Tissue enhanced
Detected in many
kidney:
28.0
small intestine:
15.2
SLC1A1
ENSSSCG00000005222
ENSG00000106688
Excitatory amino acid transporter 3
Tissue enhanced
Detected in many
brain:
18.7
kidney:
15.9
small intestine:
30.8
SLC1A4
ENSSSCG00000028282
ENSG00000115902
Solute carrier family 1 member 4
Tissue enhanced
Detected in many
lens:
49.8
skin:
26.5
SLC1A5
ENSSSCG00000003105
ENSG00000105281
Solute carrier family 1 member 5
Tissue enhanced
Detected in many
male glands:
70.1
SLC22A1
ENSSSCG00000004041
ENSG00000175003
Solute carrier family 22 member 1
Group enriched
Detected in some
kidney:
68.5
liver:
88.0
SLC22A11
ENSSSCG00000020831
ENSG00000168065
Solute carrier family 22 member 11
Tissue enriched
Detected in single
kidney:
23.5
SLC22A12
ENSSSCG00000013025
ENSG00000197891
Solute carrier family 22 member 12
Tissue enriched
Detected in single
kidney:
87.1
SLC22A2
ENSSSCG00000004040
ENSG00000112499
Solute carrier family 22 member 2
Tissue enriched
Detected in some
kidney:
68.3
SLC22A6
ENSSSCG00000023571
ENSG00000197901
Solute carrier family 22 member 6
Tissue enhanced
Detected in some
brain:
38.9
kidney:
38.9
vagus nerve:
20.4
SLC22A8
ENSSSCG00000029516
ENSG00000149452
Solute carrier family 22 member 8
Tissue enriched
Detected in many
kidney:
125.6
SLC23A1
ENSSSCG00000026423
ENSG00000170482
Solute carrier family 23 member 1
Tissue enhanced
Detected in many
kidney:
50.6
male glands:
31.0
SLC23A3
ENSSSCG00000029694
ENSG00000213901
Solute carrier family 23 member 3
Tissue enriched
Detected in single
kidney:
53.8
SLC25A15
ENSSSCG00000009373
ENSG00000102743
Mitochondrial ornithine transporter 1
Group enriched
Detected in all
kidney:
35.2
liver:
78.2
SLC25A21
ENSSSCG00000039317
ENSG00000183032
Solute carrier family 25 member 21
Tissue enhanced
Detected in many
liver:
17.3
thyroid gland:
29.1
SLC25A34
ENSSSCG00000032950
ENSG00000162461
Solute carrier family 25 member 34
Tissue enhanced
Detected in many
adipose tissue:
43.3
heart:
25.9
skeletal muscle:
36.4
SLC25A45
ENSSSCG00000012993
ENSG00000162241
Solute carrier family 25 member 45
Tissue enhanced
Detected in some
kidney:
27.2
skeletal muscle:
6.9
SLC26A1
ENSSSCG00000035739
ENSG00000145217
Solute carrier family 26 member 1
Group enriched
Detected in many
kidney:
55.9
liver:
48.3
SLC26A6
ENSSSCG00000011361
ENSG00000225697
Solute carrier family 26 member 6
Low tissue specificity
Detected in all
SLC27A2
ENSSSCG00000004643
ENSG00000140284
Very long-chain acyl-CoA synthetase
Tissue enhanced
Detected in some
kidney:
21.9
liver:
40.8
retina:
11.2
SLC27A6
ENSSSCG00000014257
ENSG00000113396
Solute carrier family 27 member 6
Tissue enhanced
Detected in many
choroid plexus:
22.6
kidney:
34.9
SLC2A2
ENSSSCG00000020927
ENSG00000163581
Solute carrier family 2, facilitated glucose transporter member 2
Tissue enriched
Detected in many
liver:
70.9
SLC2A5
ENSSSCG00000039651
ENSG00000142583
Solute carrier family 2 member 5
Tissue enhanced
Detected in many
cornea:
20.4
epididymis:
45.8
testis:
25.5
SLC30A2
ENSSSCG00000026386
ENSG00000158014
Zinc transporter 2
Tissue enriched
Detected in some
male glands:
158.7
SLC30A3
ENSSSCG00000021534
ENSG00000115194
Zinc transporter 3
Tissue enhanced
Detected in many
brain:
33.7
thyroid gland:
93.7
SLC34A1
ENSSSCG00000037535
ENSG00000131183
Sodium-dependent phosphate transport protein 2A
Tissue enriched
Detected in single
kidney:
193.9
SLC34A3
ENSSSCG00000040105
ENSG00000198569
Solute carrier family 34 member 3
Tissue enriched
Detected in many
kidney:
76.1
SLC36A4
ENSSSCG00000024933
ENSG00000180773
Solute carrier family 36 member 4
Low tissue specificity
Detected in all
SLC38A2
ENSSSCG00000000808
ENSG00000134294
Sodium-coupled neutral amino acid transporter 2
Low tissue specificity
Detected in all
SLC38A3
ENSSSCG00000011397
ENSG00000188338
Solute carrier family 38 member 3
Group enriched
Detected in many
choroid plexus:
43.4
liver:
136.6
retina:
56.5
SLC39A5
ENSSSCG00000000385
ENSG00000139540
Solute carrier family 39 member 5
Group enriched
Detected in some
kidney:
23.8
liver:
40.4
small intestine:
24.6
SLC3A1
ENSSSCG00000008449
ENSG00000138079
Neutral and basic amino acid transport protein rBAT
Tissue enhanced
Detected in many
gallbladder:
19.4
kidney:
43.3
male glands:
15.4
SLC3A2
ENSSSCG00000022404
ENSG00000168003
Solute carrier family 3 member 2
Low tissue specificity
Detected in all
SLC46A1
ENSSSCG00000023478
ENSG00000076351
Solute carrier family 46, member 1
Tissue enhanced
Detected in all
kidney:
37.1
SLC47A1
ENSSSCG00000033329
ENSG00000142494
Solute carrier family 47 member 1
Tissue enhanced
Detected in all
dura mater:
44.3
kidney:
26.8
SLC47A2
ENSSSCG00000018042
ENSG00000180638
Solute carrier family 47 member 2
Tissue enriched
Detected in some
kidney:
69.2
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