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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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916 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SLC4A4
ENSSSCG00000008943
ENSG00000080493
Electrogenic sodium bicarbonate cotransporter 1
Tissue enhanced
Detected in many
brain:
40.8
gallbladder:
56.3
kidney:
58.8
SLC4A7
ENSSSCG00000011218
ENSG00000033867
Solute carrier family 4 member 7
Low tissue specificity
Detected in all
SLC4A8
ENSSSCG00000028060
ENSG00000050438
Solute carrier family 4 member 8
Tissue enhanced
Detected in many
epididymis:
34.9
male glands:
42.4
retina:
20.8
SLC4A9
ENSSSCG00000014363
ENSG00000113073
Solute carrier family 4 member 9
Tissue enriched
Detected in some
kidney:
60.0
SLC51B
ENSSSCG00000004923
ENSG00000186198
Solute carrier family 51 beta subunit
Tissue enhanced
Detected in all
small intestine:
59.0
SLC5A12
ENSSSCG00000013338
ENSG00000148942
Solute carrier family 5 member 12
Group enriched
Detected in some
kidney:
90.9
small intestine:
39.5
SLC5A2
ENSSSCG00000024058
ENSG00000140675
Solute carrier family 5 member 2
Tissue enriched
Detected in all
kidney:
43.1
SLC5A3
ENSSSCG00000034167
ENSG00000198743
Solute carrier family 5 member 3
Tissue enhanced
Detected in all
kidney:
63.8
male glands:
116.8
SLC5A9
ENSSSCG00000003882
ENSG00000117834
Solute carrier family 5 member 9
Group enriched
Detected in some
kidney:
16.0
liver:
23.5
skin:
48.6
small intestine:
25.3
SLC6A12
ENSSSCG00000000749
ENSG00000111181
Solute carrier family 6 member 12
Group enriched
Detected in some
kidney:
33.9
liver:
49.3
SLC6A13
ENSSSCG00000030076
ENSG00000010379
Solute carrier family 6 member 13
Tissue enhanced
Detected in some
adipose tissue:
8.2
brain:
33.4
pineal gland:
10.8
SLC6A18
ENSSSCG00000017117
ENSG00000164363
Solute carrier family 6 member 18
Tissue enriched
Detected in single
kidney:
134.7
SLC6A19
ENSSSCG00000017120
ENSG00000174358
Solute carrier family 6 member 19
Group enriched
Detected in some
kidney:
37.1
small intestine:
51.7
SLC6A8
ENSSSCG00000012771
ENSG00000130821
Sodium- and chloride-dependent creatine transporter 1
Low tissue specificity
Detected in many
SLC7A13
ENSSSCG00000022935
ENSG00000164893
Solute carrier family 7 member 13
Tissue enriched
Detected in single
kidney:
22.2
SLC7A7
ENSSSCG00000002041
ENSG00000155465
Y+L amino acid transporter 1
Tissue enhanced
Detected in many
kidney:
72.2
SLC7A8
ENSSSCG00000002032
ENSG00000092068
Solute carrier family 7 member 8
Tissue enhanced
Detected in many
cervix:
45.4
kidney:
72.3
SLC7A9
ENSSSCG00000022948
ENSG00000021488
B(0,+)-type amino acid transporter 1
Tissue enhanced
Detected in all
kidney:
28.4
small intestine:
44.6
SLC8A1
ENSSSCG00000036418
ENSG00000183023
Solute carrier family 8 member A1
Tissue enhanced
Detected in many
heart:
71.3
SLC9A3R1
ENSSSCG00000017232
ENSG00000109062
Na(+)/H(+) exchange regulatory cofactor NHE-RF1
Tissue enhanced
Detected in many
kidney:
85.7
SLC9A4
ENSSSCG00000008155
ENSG00000180251
Solute carrier family 9 member A4
Group enriched
Detected in some
breast:
12.9
kidney:
17.6
stomach:
48.7
thyroid gland:
13.6
SLCO2A1
ENSSSCG00000011641
ENSG00000174640
Solute carrier organic anion transporter family member 2A1
Low tissue specificity
Detected in many
SLCO3A1
ENSSSCG00000002263
ENSG00000176463
Solute carrier organic anion transporter family member 3A1
Tissue enhanced
Detected in all
adrenal gland:
62.6
choroid plexus:
51.9
SLCO4C1
ENSSSCG00000014182
ENSG00000173930
Solute carrier organic anion transporter family member 4C1
Tissue enhanced
Detected in many
kidney:
24.7
salivary gland:
17.0
upper respiratory system:
13.8
SLIT2
ENSSSCG00000008749
ENSG00000145147
Slit guidance ligand 2
Low tissue specificity
Detected in many
SLN
ENSSSCG00000029651
ENSG00000170290
Sarcolipin
Tissue enriched
Detected in some
skeletal muscle:
333.6
SMCO3
ENSSSCG00000000610
ENSG00000179256
Single-pass membrane protein with coiled-coil domains 3
Tissue enriched
Detected in some
lens:
117.7
SMOC2
ENSSSCG00000004013
ENSG00000112562
SPARC related modular calcium binding 2
Tissue enhanced
Detected in many
cervix:
64.8
ductus deferens:
56.4
endometrium:
41.5
SMPDL3B
ENSSSCG00000003582
ENSG00000130768
Sphingomyelin phosphodiesterase acid like 3B
Tissue enhanced
Detected in all
liver:
63.2
SNAP91
ENSSSCG00000004453
ENSG00000065609
Synaptosome associated protein 91
Tissue enhanced
Detected in some
brain:
54.9
choroid plexus:
24.8
pineal gland:
39.4
retina:
34.6
SORD
ENSSSCG00000004679
ENSG00000140263
Sorbitol dehydrogenase
Group enriched
Detected in all
kidney:
31.3
liver:
83.6
male glands:
77.4
thyroid gland:
24.1
SOWAHA
ENSSSCG00000014286
ENSG00000198944
Sosondowah ankyrin repeat domain family member A
Tissue enhanced
Detected in many
brain:
40.5
kidney:
14.4
SOX17
ENSSSCG00000006256
ENSG00000164736
SRY-box 17
Tissue enhanced
Detected in many
endometrium:
45.6
fallopian tube:
28.2
SPI1
ENSSSCG00000013237
ENSG00000066336
Transcription factor PU.1
Tissue enhanced
Detected in many
lung:
52.3
SPINK7
ENSSSCG00000022035
ENSG00000145879
Serine peptidase inhibitor, Kazal type 7 (putative)
Tissue enhanced
Detected in many
male glands:
22.2
testis:
40.7
SPINK9
ENSSSCG00000014426
ENSG00000204909
Serine peptidase inhibitor, Kazal type 9
Tissue enhanced
Detected in many
male glands:
28.6
SPP1
ENSSSCG00000009216
ENSG00000118785
Osteopontin
Tissue enhanced
Detected in many
gallbladder:
209.5
ST6GAL1
ENSSSCG00000025770
ENSG00000073849
ST6 beta-galactoside alpha-2,6-sialyltransferase 1
Tissue enhanced
Detected in many
liver:
102.6
STAP1
ENSSSCG00000008923
ENSG00000035720
Signal transducing adaptor family member 1
Tissue enhanced
Detected in many
lymphoid tissue:
27.0
STARD4
ENSSSCG00000031518
ENSG00000164211
StAR-related lipid transfer protein 4
Tissue enhanced
Detected in many
liver:
30.0
ovary:
25.0
STC1
ENSSSCG00000009642
ENSG00000159167
Stanniocalcin-1 precursor
Tissue enhanced
Detected in all
mesothelial tissue:
60.3
STRA6
ENSSSCG00000001909
ENSG00000137868
Stimulated by retinoic acid 6
Tissue enhanced
Detected in many
kidney:
79.5
lens:
35.1
STRIP2
ENSSSCG00000016567
ENSG00000128578
Striatin interacting protein 2
Tissue enhanced
Detected in many
brain:
52.9
pineal gland:
26.5
STX3
ENSSSCG00000013119
ENSG00000166900
Syntaxin 3
Tissue enhanced
Detected in many
retina:
73.9
SUCNR1
ENSSSCG00000022105
ENSG00000198829
Succinate receptor 1
Tissue enriched
Detected in many
liver:
28.7
SULT1C2
ENSSSCG00000022153
ENSG00000198203
Sulfotransferase family 1C member 2
Tissue enhanced
Detected in all
kidney:
34.7
stomach:
54.8
SUSD2
ENSSSCG00000025393
ENSG00000099994
Sushi domain containing 2
Tissue enhanced
Detected in many
kidney:
42.5
SYTL3
ENSSSCG00000004057
ENSG00000164674
Synaptotagmin like 3
Tissue enhanced
Detected in many
lymphoid tissue:
20.1
TACSTD2
ENSSSCG00000003832
ENSG00000184292
Tumor associated calcium signal transducer 2
Tissue enhanced
Detected in many
cornea:
60.8
upper respiratory system:
52.2
urinary bladder:
76.7
TBC1D13
ENSSSCG00000005660
ENSG00000107021
TBC1 domain family member 13
Low tissue specificity
Detected in all
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