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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Endocrine and metabolic diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Skin diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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382 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000001826
ENSG00000163885
Tissue enhanced
Detected in many
male glands:
58.3
na
ENSSSCG00000002637
ENSG00000003249
Tissue enhanced
Detected in many
brain:
24.3
lens:
36.0
na
ENSSSCG00000002749
ENSG00000257017,ENSG00000261701
Haptoglobin Haptoglobin alpha chain Haptoglobin beta chain
Tissue enriched
Detected in some
liver:
402.4
na
ENSSSCG00000003451
ENSG00000162493
Tissue enhanced
Detected in many
cartilage:
53.1
na
ENSSSCG00000003521
Protein Wnt-4
Tissue enhanced
Detected in many
cornea:
49.8
na
ENSSSCG00000004081
Tissue enhanced
Detected in many
brain:
60.3
na
ENSSSCG00000005257
ENSG00000083067
Tissue enhanced
Detected in many
choroid plexus:
72.7
lens:
49.2
na
ENSSSCG00000005278
Tissue enhanced
Detected in many
smooth muscle:
96.0
na
ENSSSCG00000005457
ENSG00000198121
Lysophosphatidic acid receptor 1
Tissue enhanced
Detected in many
brain:
47.5
cartilage:
77.7
na
ENSSSCG00000005638
Neutrophil gelatinase-associated lipocalin precursor
Tissue enhanced
Detected in all
cornea:
148.2
dura mater:
60.0
upper respiratory system:
120.1
na
ENSSSCG00000006525
ENSG00000185499
Tissue enhanced
Detected in many
ductus deferens:
54.4
gallbladder:
54.0
kidney:
50.9
stomach:
70.9
na
ENSSSCG00000007135
ENSG00000101004
Tissue enhanced
Detected in many
cartilage:
37.1
kidney:
24.5
mesothelial tissue:
34.5
na
ENSSSCG00000008001
ENSG00000102854
Tissue enhanced
Detected in many
cornea:
31.8
gallbladder:
30.3
mesothelial tissue:
27.5
na
ENSSSCG00000008421
ENSG00000138039
Sus scrofa lutropin-choriogonadotropic hormone receptor-like (LOC100623180), mRNA.
Group enriched
Detected in many
ovary:
28.1
testis:
49.6
na
ENSSSCG00000009138
ENSG00000205403,ENSG00000285330
Tissue enhanced
Detected in many
liver:
109.6
small intestine:
45.6
na
ENSSSCG00000009503
Tissue enhanced
Detected in some
adipose tissue:
9.9
brain:
24.4
smooth muscle:
12.3
thyroid gland:
27.5
na
ENSSSCG00000010370
ENSG00000264230
Annexin A8
Tissue enhanced
Detected in many
cartilage:
88.9
cornea:
140.2
mesothelial tissue:
67.1
na
ENSSSCG00000010893
ENSG00000000971
Complement factor H precursor
Tissue enhanced
Detected in many
liver:
146.5
synovial tissue:
73.4
na
ENSSSCG00000012049
ENSG00000180509,ENSG00000276289
Group enriched
Detected in many
ductus deferens:
18.2
heart:
53.0
ovary:
16.4
small intestine:
35.1
na
ENSSSCG00000012571
Tissue enhanced
Detected in many
cervix:
39.4
lens:
48.1
na
ENSSSCG00000013714
ENSG00000181143
Tissue enhanced
Detected in many
esophagus:
68.7
fallopian tube:
25.2
mesothelial tissue:
48.7
upper respiratory system:
34.2
na
ENSSSCG00000014097
ENSG00000113231,ENSG00000284762
Tissue enhanced
Detected in many
brain:
29.5
thyroid gland:
26.6
na
ENSSSCG00000015632
ENSG00000106078
Tissue enhanced
Detected in many
heart:
43.9
kidney:
37.5
na
ENSSSCG00000015773
Tissue enhanced
Detected in many
brain:
41.6
na
ENSSSCG00000016475
Tissue enriched
Detected in many
lymphoid tissue:
140.2
na
ENSSSCG00000017699
Tissue enhanced
Detected in many
heart:
10.5
mesothelial tissue:
9.5
na
ENSSSCG00000017920
ENSG00000161921
C-X-C motif chemokine 16 precursor
Tissue enhanced
Detected in many
mesothelial tissue:
82.8
na
ENSSSCG00000021222
Tryptase precursor
Tissue enhanced
Detected in many
cartilage:
13.7
gallbladder:
18.5
na
ENSSSCG00000022228
Tissue enhanced
Detected in some
adipose tissue:
9.0
liver:
7.6
lung:
19.1
synovial tissue:
10.7
na
ENSSSCG00000024666
ENSG00000089356
FXYD domain-containing ion transport regulator 3 precursor
Tissue enhanced
Detected in many
esophagus:
71.7
salivary gland:
71.9
stomach:
109.7
upper respiratory system:
113.0
na
ENSSSCG00000024796
ENSG00000243566
Group enriched
Detected in many
adipose tissue:
59.8
mesothelial tissue:
180.8
na
ENSSSCG00000024914
ENSG00000243649
Complement factor B precursor
Tissue enhanced
Detected in many
liver:
148.2
small intestine:
99.1
na
ENSSSCG00000025207
Tissue enhanced
Detected in many
skin:
27.3
na
ENSSSCG00000027970
ENSG00000167371
Tissue enriched
Detected in many
brain:
53.2
na
ENSSSCG00000028997
ENSG00000078399
Tissue enhanced
Detected in many
cartilage:
33.7
kidney:
29.7
urinary bladder:
29.9
na
ENSSSCG00000029414
Ficolin-1 precursor
Tissue enhanced
Detected in all
adipose tissue:
25.2
bone marrow:
19.2
na
ENSSSCG00000029449
ENSG00000116690
Tissue enriched
Detected in some
cartilage:
708.5
na
ENSSSCG00000029791
Low tissue specificity
Detected in many
na
ENSSSCG00000030269
ENSG00000167080
Tissue enhanced
Detected in many
male glands:
51.7
mesothelial tissue:
31.5
upper respiratory system:
41.2
na
ENSSSCG00000031037
Tissue enhanced
Detected in many
large intestine:
180.5
lung:
127.2
small intestine:
136.6
upper respiratory system:
377.3
na
ENSSSCG00000031545
Tissue enhanced
Detected in many
choroid plexus:
28.6
fallopian tube:
48.1
na
ENSSSCG00000031703
ENSG00000164488
Tissue enhanced
Detected in some
brain:
18.9
lens:
15.7
mesothelial tissue:
14.0
na
ENSSSCG00000031902
Tissue enriched
Detected in some
lymphoid tissue:
159.3
na
ENSSSCG00000032702
ENSG00000154639
Tissue enriched
Detected in many
lens:
106.7
na
ENSSSCG00000032788
Tissue enhanced
Detected in many
fallopian tube:
23.1
na
ENSSSCG00000033041
SCG6 (secretogranin VI) isoform SCG6
Group enriched
Detected in many
brain:
57.4
cartilage:
39.5
pituitary gland:
124.7
na
ENSSSCG00000033350
ENSG00000114200
Tissue enriched
Detected in many
salivary gland:
111.4
na
ENSSSCG00000033363
Tissue enhanced
Detected in many
adipose tissue:
17.8
na
ENSSSCG00000033452
ENSG00000117983
Group enriched
Detected in many
esophagus:
840.8
male glands:
548.7
na
ENSSSCG00000033482
Group enriched
Detected in many
brain:
96.2
skeletal muscle:
77.6
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