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Chromosome
1
2
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7
8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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765 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SIX3
ENSSSCG00000039283
ENSG00000138083
SIX homeobox 3
Group enriched
Detected in some
brain:
16.8
lens:
51.1
pituitary gland:
42.1
retina:
28.4
upper respiratory system:
33.6
SKAP2
ENSSSCG00000016708
ENSG00000005020
Src kinase associated phosphoprotein 2
Low tissue specificity
Detected in many
SLA-DMA
ENSSSCG00000001470
ENSG00000204257
SLA-DM alpha chain precursor
Tissue enhanced
Detected in many
lymphoid tissue:
51.5
SLA-DMB
ENSSSCG00000001469
ENSG00000242574
MHC class II, DM beta precursor
Low tissue specificity
Detected in many
SLC12A2
ENSSSCG00000014255
ENSG00000064651
Solute carrier family 12 member 2
Tissue enriched
Detected in many
male glands:
217.5
SLC22A3
ENSSSCG00000004039
ENSG00000146477
Solute carrier family 22 member 3
Tissue enhanced
Detected in all
male glands:
30.5
SLC23A1
ENSSSCG00000026423
ENSG00000170482
Solute carrier family 23 member 1
Tissue enhanced
Detected in many
kidney:
50.6
male glands:
31.0
SLC26A7
ENSSSCG00000006116
ENSG00000147606
Solute carrier family 26 member 7
Tissue enhanced
Detected in many
kidney:
46.2
male glands:
25.2
thyroid gland:
79.4
SLC28A3
ENSSSCG00000010960
ENSG00000197506
Solute carrier family 28 member 3
Tissue enriched
Detected in some
male glands:
65.7
SLC2A4
ENSSSCG00000023915
ENSG00000181856
Solute carrier family 2, facilitated glucose transporter member 4
Tissue enhanced
Detected in many
heart:
43.0
skeletal muscle:
81.6
SLC31A2
ENSSSCG00000023714
ENSG00000136867
Probable low affinity copper uptake protein 2
Tissue enhanced
Detected in many
esophagus:
26.6
salivary gland:
89.5
upper respiratory system:
21.7
SLC5A1
ENSSSCG00000010036
ENSG00000100170
Sodium/glucose cotransporter 1
Tissue enhanced
Detected in many
ductus deferens:
32.3
gallbladder:
27.8
small intestine:
95.9
upper respiratory system:
37.0
SLC5A5
ENSSSCG00000013890
ENSG00000105641
Sodium/iodide cotransporter
Group enriched
Detected in some
choroid plexus:
68.1
stomach:
42.9
thyroid gland:
100.2
SLCO1A2
ENSSSCG00000000584
ENSG00000084453
Solute carrier organic anion transporter family member 1A2
Tissue enhanced
Detected in many
brain:
34.3
choroid plexus:
35.1
upper respiratory system:
86.1
SMC2
ENSSSCG00000005403
ENSG00000136824
Structural maintenance of chromosomes 2
Tissue enhanced
Detected in all
lymphoid tissue:
44.7
SNAP91
ENSSSCG00000004453
ENSG00000065609
Synaptosome associated protein 91
Tissue enhanced
Detected in some
brain:
54.9
choroid plexus:
24.8
pineal gland:
39.4
retina:
34.6
SNORC
ENSSSCG00000016294
ENSG00000182600
Uncharacterized protein C2orf82 homolog precursor
Tissue enriched
Detected in some
cartilage:
229.6
SNPH
ENSSSCG00000039392
ENSG00000101298
Syntaphilin
Tissue enhanced
Detected in many
brain:
23.9
male glands:
18.0
SNX10
ENSSSCG00000037598
ENSG00000086300
Sorting nexin 10
Tissue enhanced
Detected in many
brain:
32.5
epididymis:
20.9
pineal gland:
25.2
SOCS1
ENSSSCG00000027855
ENSG00000185338
Suppressor of cytokine signaling 1
Tissue enhanced
Detected in many
cartilage:
76.2
stomach:
35.0
SORBS1
ENSSSCG00000010494
ENSG00000095637
Sorbin and SH3 domain containing 1
Tissue enhanced
Detected in all
smooth muscle:
127.1
SORCS1
ENSSSCG00000030026
ENSG00000108018
Sortilin related VPS10 domain containing receptor 1
Group enriched
Detected in many
ductus deferens:
55.7
vagus nerve:
78.5
SORCS3
ENSSSCG00000010617
ENSG00000156395
Sortilin related VPS10 domain containing receptor 3
Tissue enhanced
Detected in some
brain:
15.0
epididymis:
7.6
upper respiratory system:
6.0
SOX10
ENSSSCG00000039315
ENSG00000100146
Transcription factor SOX-10
Tissue enhanced
Detected in many
brain:
61.7
salivary gland:
39.3
vagus nerve:
94.8
SOX11
ENSSSCG00000008649
ENSG00000176887
SRY-box 11
Group enriched
Detected in some
brain:
18.5
heart:
10.2
upper respiratory system:
5.6
SOX21
ENSSSCG00000009494
ENSG00000125285
SRY-box 21
Tissue enhanced
Detected in some
skin:
16.6
stomach:
55.5
upper respiratory system:
13.7
SOX8
ENSSSCG00000037970
ENSG00000005513
SRY-box 8
Tissue enhanced
Detected in many
brain:
46.0
cartilage:
42.6
vagus nerve:
45.0
SP8
ENSSSCG00000031078
ENSG00000164651
Sp8 transcription factor
Group enriched
Detected in some
brain:
27.7
male glands:
31.4
upper respiratory system:
19.0
SPACA4
ENSSSCG00000025441
ENSG00000177202
Sperm acrosome membrane-associated protein 4 precursor
Tissue enriched
Detected in some
testis:
101.4
SPARCL1
ENSSSCG00000009222
ENSG00000152583
SPARC-like protein 1 precursor
Tissue enhanced
Detected in all
cervix:
136.6
smooth muscle:
134.5
SPATA22
ENSSSCG00000029709
ENSG00000141255
Spermatogenesis-associated protein 22
Tissue enriched
Detected in some
testis:
62.2
SPC24
ENSSSCG00000033444
ENSG00000161888
SPC24, NDC80 kinetochore complex component
Tissue enhanced
Detected in many
dura mater:
16.8
lymphoid tissue:
17.2
testis:
17.4
SPI1
ENSSSCG00000013237
ENSG00000066336
Transcription factor PU.1
Tissue enhanced
Detected in many
lung:
52.3
SPP1
ENSSSCG00000009216
ENSG00000118785
Osteopontin
Tissue enhanced
Detected in many
gallbladder:
209.5
SPTLC3
ENSSSCG00000007072
ENSG00000172296
Serine palmitoyltransferase long chain base subunit 3
Tissue enhanced
Detected in many
skin:
21.9
vagus nerve:
24.0
SST
ENSSSCG00000033815
ENSG00000157005
Somatostatin Somatostatin-28 Somatostatin-14
Tissue enhanced
Detected in many
brain:
31.9
small intestine:
13.8
stomach:
17.6
ST3GAL4
ENSSSCG00000015232
ENSG00000110080
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 4
Tissue enriched
Detected in many
male glands:
175.5
STAP1
ENSSSCG00000008923
ENSG00000035720
Signal transducing adaptor family member 1
Tissue enhanced
Detected in many
lymphoid tissue:
27.0
STATH
ENSSSCG00000023797
Statherin precursor
Tissue enriched
Detected in some
salivary gland:
180.8
STMN1
ENSSSCG00000026257
ENSG00000117632
Stathmin
Tissue enhanced
Detected in all
brain:
111.8
lymphoid tissue:
71.7
STRA6
ENSSSCG00000001909
ENSG00000137868
Stimulated by retinoic acid 6
Tissue enhanced
Detected in many
kidney:
79.5
lens:
35.1
STYK1
ENSSSCG00000000634
ENSG00000060140
Serine/threonine/tyrosine kinase 1
Tissue enhanced
Detected in some
large intestine:
24.3
male glands:
14.9
stomach:
81.4
SULT1A3
ENSSSCG00000021557
ENSG00000196502,ENSG00000197165,ENSG00000213648,ENSG00000261052
Sulfotransferase 1A3
Tissue enhanced
Detected in many
adipose tissue:
70.7
cervix:
81.1
SUSD5
ENSSSCG00000039358
ENSG00000173705
Sushi domain containing 5
Tissue enriched
Detected in many
cartilage:
62.4
SV2C
ENSSSCG00000034062
ENSG00000122012
Synaptic vesicle glycoprotein 2C
Tissue enhanced
Detected in some
brain:
25.1
pineal gland:
21.5
salivary gland:
33.9
SYK
ENSSSCG00000009589
ENSG00000165025
Tyrosine-protein kinase SYK
Tissue enhanced
Detected in many
lymphoid tissue:
45.1
upper respiratory system:
24.1
SYNE4
ENSSSCG00000002929
ENSG00000181392
Spectrin repeat containing nuclear envelope family member 4
Tissue enhanced
Detected in many
male glands:
29.1
salivary gland:
15.6
SYNM
ENSSSCG00000035223
ENSG00000182253
Synemin
Tissue enriched
Detected in many
smooth muscle:
222.0
SYNPO2
ENSSSCG00000009111
ENSG00000172403
Synaptopodin 2
Tissue enhanced
Detected in many
smooth muscle:
198.1
TAC4
ENSSSCG00000038057
ENSG00000176358
Tachykinin-4 precursor
Tissue enhanced
Detected in all
esophagus:
29.1
salivary gland:
42.8
upper respiratory system:
25.8
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