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Chromosome
1
2
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8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
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Adipose tissue
Brain
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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765 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TBX15
ENSSSCG00000006725
ENSG00000092607
T-box 15
Tissue enhanced
Detected in many
cartilage:
46.3
mouth:
36.9
skeletal muscle:
74.2
synovial tissue:
31.8
TBX4
ENSSSCG00000022980
ENSG00000121075
T-box transcription factor TBX4
Tissue enhanced
Detected in many
cartilage:
44.1
lung:
21.4
penis:
14.5
urinary bladder:
19.8
TBX5
ENSSSCG00000009867
ENSG00000089225
T-box 5
Tissue enriched
Detected in some
heart:
65.3
TCF19
ENSSSCG00000001392
ENSG00000137310
Transcription factor 19
Tissue enhanced
Detected in many
lymphoid tissue:
11.0
TCN1
ENSSSCG00000039252
ENSG00000134827
Transcobalamin 1
Group enriched
Detected in all
small intestine:
207.7
stomach:
156.3
TFAP2B
ENSSSCG00000025535
ENSG00000008196
Transcription factor AP-2-beta
Group enriched
Detected in many
breast:
49.4
epididymis:
82.5
TFAP2C
ENSSSCG00000007499
ENSG00000087510
Transcription factor AP-2 gamma
Tissue enhanced
Detected in many
cornea:
34.6
skin:
18.5
upper respiratory system:
16.4
TFF2
ENSSSCG00000024320
ENSG00000160181
Trefoil factor 2
Group enriched
Detected in some
small intestine:
670.0
stomach:
368.3
TFF3
ENSSSCG00000022857
ENSG00000160180
Trefoil factor 3 precursor
Group enriched
Detected in many
male glands:
394.8
upper respiratory system:
123.4
THBS2
ENSSSCG00000004012
ENSG00000186340
Thrombospondin 2
Tissue enhanced
Detected in many
cornea:
56.1
dura mater:
89.5
THBS4
ENSSSCG00000014117
ENSG00000113296
Thrombospondin 4
Tissue enhanced
Detected in many
bone marrow:
79.3
cornea:
86.9
smooth muscle:
78.7
synovial tissue:
82.6
TIMP1
ENSSSCG00000012277
ENSG00000102265
Metalloproteinase inhibitor 1 precursor
Tissue enriched
Detected in many
ovary:
718.4
TMEM123
ENSSSCG00000031170
ENSG00000152558
Transmembrane protein 123
Tissue enhanced
Detected in all
lens:
69.8
lymphoid tissue:
71.9
TMEM132A
ENSSSCG00000013113
ENSG00000006118
Transmembrane protein 132A
Tissue enhanced
Detected in all
brain:
35.1
TMEM163
ENSSSCG00000015700
ENSG00000152128
Transmembrane protein 163
Tissue enhanced
Detected in many
brain:
21.8
heart:
8.5
lymphoid tissue:
9.7
TMEM176A
ENSSSCG00000016443
ENSG00000002933
Transmembrane protein 176A
Tissue enhanced
Detected in many
gallbladder:
91.7
TMEM176B
ENSSSCG00000016444
ENSG00000106565
Transmembrane protein 176B
Tissue enhanced
Detected in many
gallbladder:
66.8
TMEM254
ENSSSCG00000024300
ENSG00000133678
Transmembrane protein 254
Tissue enhanced
Detected in all
salivary gland:
118.7
TMEM255B
ENSSSCG00000009564
ENSG00000184497
Transmembrane protein 255B
Tissue enhanced
Detected in many
choroid plexus:
11.6
cornea:
21.7
lymphoid tissue:
30.5
TMEM63B
ENSSSCG00000001697
ENSG00000137216
Transmembrane protein 63B
Tissue enhanced
Detected in all
stomach:
63.6
TMPRSS11E
ENSSSCG00000022140
ENSG00000087128
Transmembrane serine protease 11E
Tissue enhanced
Detected in some
cornea:
68.3
mouth:
17.9
upper respiratory system:
13.5
TMSB10
ENSSSCG00000008245
ENSG00000034510
Thymosin beta-10
Low tissue specificity
Detected in all
TNC
ENSSSCG00000005494
ENSG00000041982
Tenascin precursor
Tissue enhanced
Detected in many
cartilage:
169.5
smooth muscle:
64.2
synovial tissue:
56.1
TNFRSF13C
ENSSSCG00000039074
ENSG00000159958
TNF receptor superfamily member 13C
Tissue enhanced
Detected in many
lymphoid tissue:
42.7
upper respiratory system:
22.0
TNFRSF4
ENSSSCG00000003331
ENSG00000186827
TNF receptor superfamily member 4
Tissue enhanced
Detected in some
lung:
9.0
lymphoid tissue:
32.2
stomach:
12.7
TNFRSF8
ENSSSCG00000003437
ENSG00000120949
TNF receptor superfamily member 8
Tissue enhanced
Detected in many
lung:
15.2
ovary:
33.7
TNMD
ENSSSCG00000012480
ENSG00000000005
Tenomodulin
Group enriched
Detected in some
brain:
27.8
choroid plexus:
33.0
dura mater:
43.7
TOP2A
ENSSSCG00000017473
ENSG00000131747
DNA topoisomerase 2-alpha
Tissue enhanced
Detected in all
lymphoid tissue:
51.2
testis:
40.2
TOX2
ENSSSCG00000022202
ENSG00000124191
TOX high mobility group box family member 2
Group enriched
Detected in many
brain:
14.4
lens:
50.9
lymphoid tissue:
36.0
pituitary gland:
19.8
TOX3
ENSSSCG00000002835
ENSG00000103460
TOX high mobility group box family member 3
Tissue enhanced
Detected in many
lens:
84.4
TPD52L1
ENSSSCG00000004225
ENSG00000111907
Tumor protein D52 like 1
Tissue enhanced
Detected in many
brain:
50.0
choroid plexus:
38.9
salivary gland:
61.3
TPX2
ENSSSCG00000007235
ENSG00000088325
TPX2, microtubule nucleation factor
Tissue enhanced
Detected in all
lymphoid tissue:
45.9
testis:
34.7
TRH
ENSSSCG00000011596
ENSG00000170893
Thyrotropin-releasing hormone precursor
Tissue enhanced
Detected in some
brain:
30.5
gallbladder:
9.6
upper respiratory system:
7.0
TROAP
ENSSSCG00000023176
ENSG00000135451
Trophinin associated protein
Tissue enhanced
Detected in many
lymphoid tissue:
19.7
TSKU
ENSSSCG00000014871
ENSG00000182704
Tsukushi, small leucine rich proteoglycan
Tissue enhanced
Detected in many
kidney:
62.7
lens:
49.8
ovary:
81.7
TSPAN2
ENSSSCG00000006748
ENSG00000134198
Tetraspanin 2
Tissue enhanced
Detected in many
cervix:
42.1
smooth muscle:
36.8
TTK
ENSSSCG00000004466
ENSG00000112742
TTK protein kinase
Tissue enhanced
Detected in many
lymphoid tissue:
21.4
testis:
36.1
TYMS
ENSSSCG00000040678
ENSG00000176890
Thymidylate synthase
Tissue enhanced
Detected in many
lymphoid tissue:
29.7
upper respiratory system:
23.1
UBE2C
ENSSSCG00000007423
ENSG00000175063
Ubiquitin conjugating enzyme E2 C
Tissue enhanced
Detected in many
large intestine:
25.7
lymphoid tissue:
43.3
upper respiratory system:
30.0
UBE2T
ENSSSCG00000010923
ENSG00000077152
Ubiquitin conjugating enzyme E2 T
Low tissue specificity
Detected in many
UCP2
ENSSSCG00000014833
ENSG00000175567
Mitochondrial uncoupling protein 2
Tissue enhanced
Detected in many
lens:
49.1
lung:
55.0
lymphoid tissue:
69.1
upper respiratory system:
61.4
UHRF1
ENSSSCG00000013517
ENSG00000276043
Ubiquitin like with PHD and ring finger domains 1
Tissue enriched
Detected in many
lymphoid tissue:
91.7
USH2A
ENSSSCG00000038066
ENSG00000042781
Usherin
Tissue enriched
Detected in some
retina:
61.5
VCAM1
ENSSSCG00000006862
ENSG00000162692
Vascular cell adhesion protein 1 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
98.3
VEGFD
ENSSSCG00000012135
ENSG00000165197
Vascular endothelial growth factor D
Low tissue specificity
Detected in many
VIT
ENSSSCG00000008501
ENSG00000205221
Vitrin
Group enriched
Detected in many
cartilage:
112.4
lens:
52.1
VMO1
ENSSSCG00000017915
ENSG00000182853
Vitelline membrane outer layer protein 1 homolog precursor
Group enriched
Detected in many
salivary gland:
21.5
upper respiratory system:
61.2
WDR72
ENSSSCG00000004615
ENSG00000166415
WD repeat domain 72
Tissue enhanced
Detected in some
choroid plexus:
20.5
kidney:
41.9
WDR86
ENSSSCG00000016437
ENSG00000187260
WD repeat domain 86
Low tissue specificity
Detected in many
WIPF1
ENSSSCG00000027348
ENSG00000115935
WAS/WASL interacting protein family member 1
Low tissue specificity
Detected in all
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