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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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765 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PRRX1
ENSSSCG00000031503
ENSG00000116132
Paired related homeobox 1
Tissue enhanced
Detected in many
cervix:
63.8
dura mater:
70.7
PRRX2
ENSSSCG00000005680
ENSG00000167157
Paired related homeobox 2
Tissue enhanced
Detected in many
mesothelial tissue:
34.2
PRSS27
ENSSSCG00000008062
ENSG00000172382
Serine protease 27
Tissue enriched
Detected in some
mouth:
61.5
PTPRC
ENSSSCG00000010908
ENSG00000081237
Protein tyrosine phosphatase, receptor type C
Tissue enhanced
Detected in many
lung:
34.8
lymphoid tissue:
98.6
upper respiratory system:
33.5
PTPRCAP
ENSSSCG00000012909
ENSG00000213402
Protein tyrosine phosphatase, receptor type C associated protein
Tissue enhanced
Detected in many
lung:
35.4
lymphoid tissue:
108.0
small intestine:
39.3
upper respiratory system:
46.9
PTPRN2
ENSSSCG00000026661
ENSG00000155093
Protein tyrosine phosphatase, receptor type N2
Tissue enhanced
Detected in many
brain:
27.0
pituitary gland:
21.7
stomach:
50.4
PXYLP1
ENSSSCG00000011670
ENSG00000155893
2-phosphoxylose phosphatase 1
Tissue enriched
Detected in all
cartilage:
103.9
RAP1GAP
ENSSSCG00000022029
ENSG00000076864
RAP1 GTPase activating protein
Tissue enhanced
Detected in many
brain:
81.1
male glands:
31.9
salivary gland:
29.6
RAP1GAP2
ENSSSCG00000034858
ENSG00000132359
RAP1 GTPase activating protein 2
Tissue enhanced
Detected in many
brain:
34.0
RASGRP1
ENSSSCG00000004791
ENSG00000172575
RAS guanyl releasing protein 1
Tissue enhanced
Detected in many
brain:
41.1
lymphoid tissue:
37.1
RASSF2
ENSSSCG00000032601
ENSG00000101265
Ras association domain family member 2
Tissue enhanced
Detected in all
dura mater:
59.9
RBP1
ENSSSCG00000011664
ENSG00000114115
Retinol-binding protein 1
Tissue enhanced
Detected in many
choroid plexus:
50.2
cornea:
58.8
RCSD1
ENSSSCG00000006307
ENSG00000198771
CapZ-interacting protein
Tissue enhanced
Detected in many
lymphoid tissue:
43.6
REEP1
ENSSSCG00000023710
ENSG00000068615
Receptor accessory protein 1
Tissue enhanced
Detected in many
brain:
26.5
lens:
63.7
RGS13
ENSSSCG00000040300
ENSG00000127074
Regulator of G protein signaling 13
Tissue enhanced
Detected in all
lymphoid tissue:
41.7
RHOH
ENSSSCG00000008794
ENSG00000168421
Rho-related GTP-binding protein RhoH
Tissue enriched
Detected in many
lymphoid tissue:
70.4
RMI2
ENSSSCG00000022149
ENSG00000175643
RecQ mediated genome instability 2
Tissue enhanced
Detected in many
large intestine:
14.3
lymphoid tissue:
19.7
RNASE1
ENSSSCG00000031649
ENSG00000129538
Ribonuclease pancreatic precursor
Tissue enhanced
Detected in many
brain:
72.9
stomach:
33.9
RNF144B
ENSSSCG00000001076
ENSG00000137393
Ring finger protein 144B
Low tissue specificity
Detected in all
ROBO2
ENSSSCG00000012002
ENSG00000185008
Roundabout guidance receptor 2
Tissue enhanced
Detected in many
brain:
27.0
retina:
23.6
RPRM
ENSSSCG00000037225
ENSG00000177519
Reprimo, TP53 dependent G2 arrest mediator homolog
Group enriched
Detected in many
brain:
38.8
ductus deferens:
116.1
RSPO2
ENSSSCG00000006034
ENSG00000147655
R-spondin-2 precursor
Tissue enhanced
Detected in many
brain:
21.1
gallbladder:
17.4
synovial tissue:
11.3
upper respiratory system:
13.7
RTN1
ENSSSCG00000025013
ENSG00000139970
Reticulon-1 isoform 2
Tissue enhanced
Detected in some
brain:
52.6
pineal gland:
20.2
retina:
11.8
RYR2
ENSSSCG00000010142
ENSG00000198626
Ryanodine receptor 2
Tissue enriched
Detected in many
heart:
143.0
S100A12
ENSSSCG00000032857
ENSG00000163221
Protein S100-A12
Tissue enriched
Detected in some
cornea:
228.2
S100A4
ENSSSCG00000006578
ENSG00000196154
Protein S100-A4
Tissue enriched
Detected in many
lens:
255.7
S100A8
ENSSSCG00000006590
ENSG00000143546
Protein S100-A8
Group enriched
Detected in some
cornea:
459.9
mouth:
180.6
S1PR3
ENSSSCG00000009580
ENSG00000213694
Sphingosine-1-phosphate receptor 3
Tissue enhanced
Detected in many
lens:
30.8
ovary:
50.9
S1PR4
ENSSSCG00000013474
ENSG00000125910
Sphingosine-1-phosphate receptor 4
Tissue enhanced
Detected in some
lymphoid tissue:
17.9
upper respiratory system:
6.5
SAL1
ENSSSCG00000005474
Salivary lipocalin precursor
Tissue enriched
Detected in some
salivary gland:
3149.4
SCARA5
ENSSSCG00000009672
ENSG00000168079
Scavenger receptor class A member 5
Tissue enhanced
Detected in many
dura mater:
48.8
SCEL
ENSSSCG00000009474
ENSG00000136155
Sciellin
Tissue enhanced
Detected in many
cornea:
18.9
mouth:
63.1
skin:
32.3
SCGB1A1
ENSSSCG00000013060
ENSG00000149021
Secretoglobin family 1A member 1
Tissue enriched
Detected in some
lung:
599.3
SCGB1D1
ENSSSCG00000013068
Secretoglobin family 1D member 1 precursor
Tissue enriched
Detected in some
salivary gland:
1595.9
SCGB3A1
ENSSSCG00000014008
ENSG00000161055
Secretoglobin family 3A member 1
Group enriched
Detected in some
lung:
32.5
upper respiratory system:
88.8
SCGB3A2
ENSSSCG00000024111
ENSG00000164265
Secretoglobin family 3A member 2
Group enriched
Detected in some
lung:
110.2
thyroid gland:
192.7
SCGN
ENSSSCG00000001101
ENSG00000079689
Secretagogin
Tissue enhanced
Detected in some
brain:
65.7
breast:
59.3
esophagus:
45.3
SCIMP
ENSSSCG00000017896
ENSG00000161929
SLP adaptor and CSK interacting membrane protein
Tissue enhanced
Detected in many
lung:
16.2
lymphoid tissue:
37.2
upper respiratory system:
19.5
SCNN1B
ENSSSCG00000028923
ENSG00000168447
Sodium channel epithelial 1 beta subunit
Tissue enhanced
Detected in many
kidney:
24.3
stomach:
38.0
SCUBE1
ENSSSCG00000000029
ENSG00000159307
Signal peptide, CUB domain and EGF like domain containing 1
Tissue enhanced
Detected in many
cervix:
50.6
endometrium:
43.3
SEC16B
ENSSSCG00000039332
ENSG00000120341
SEC16 homolog B, endoplasmic reticulum export factor
Tissue enhanced
Detected in many
liver:
49.9
stomach:
26.0
SEMA3C
ENSSSCG00000023784
ENSG00000075223
Semaphorin 3C
Tissue enhanced
Detected in many
cartilage:
97.2
SEMA7A
ENSSSCG00000023165
ENSG00000138623
Semaphorin 7A (John Milton Hagen blood group)
Tissue enhanced
Detected in many
lymphoid tissue:
35.5
ovary:
49.9
SERPINE1
ENSSSCG00000025698
ENSG00000106366
Plasminogen activator inhibitor 1 precursor
Tissue enriched
Detected in many
ovary:
397.7
SFRP1
ENSSSCG00000025822
ENSG00000104332
Secreted frizzled related protein 1
Tissue enhanced
Detected in many
choroid plexus:
166.0
SFRP2
ENSSSCG00000009004
ENSG00000145423
Secreted frizzled-related protein 2 precursor
Tissue enhanced
Detected in many
dura mater:
179.5
retina:
111.4
SFRP4
ENSSSCG00000035299
ENSG00000106483
Secreted frizzled-related protein 4 precursor
Tissue enhanced
Detected in many
dura mater:
134.2
upper respiratory system:
41.4
vagus nerve:
48.3
SGO1
ENSSSCG00000011207
ENSG00000129810
Shugoshin 1
Tissue enhanced
Detected in many
lymphoid tissue:
23.9
SH3BGR
ENSSSCG00000029219
ENSG00000185437
SH3 domain-binding glutamic acid-rich protein
Tissue enhanced
Detected in many
heart:
42.7
skeletal muscle:
85.0
smooth muscle:
46.7
SHISA2
ENSSSCG00000030113
ENSG00000180730
Shisa family member 2
Tissue enhanced
Detected in many
cartilage:
90.7
male glands:
23.3
skeletal muscle:
26.0
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