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Chromosome
1
2
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6
7
8
9
10
11
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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765 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
NYAP1
ENSSSCG00000030337
ENSG00000166924
Neuronal tyrosine phosphorylated phosphoinositide-3-kinase adaptor 1
Low tissue specificity
Detected in many
OBP
ENSSSCG00000012095
Odorant-binding protein precursor
Tissue enriched
Detected in single
upper respiratory system:
482.6
ODAM
ENSSSCG00000009266
ENSG00000109205
Odontogenic ameloblast-associated protein precursor
Tissue enhanced
Detected in some
esophagus:
8.0
salivary gland:
16.7
upper respiratory system:
14.9
ODF3L2
ENSSSCG00000032811
ENSG00000181781
Outer dense fiber of sperm tails 3 like 2
Tissue enriched
Detected in some
testis:
84.0
OLFM1
ENSSSCG00000029715
ENSG00000130558
Olfactomedin 1
Tissue enhanced
Detected in many
brain:
87.2
lens:
29.0
OLFM4
ENSSSCG00000009444
ENSG00000102837
Olfactomedin 4
Group enriched
Detected in some
large intestine:
266.2
stomach:
97.8
upper respiratory system:
106.9
ORC1
ENSSSCG00000003861
ENSG00000085840
Origin recognition complex subunit 1
Tissue enhanced
Detected in many
lymphoid tissue:
18.0
testis:
41.2
OSR1
ENSSSCG00000008606
ENSG00000143867
Odd-skipped related transciption factor 1
Tissue enhanced
Detected in many
urinary bladder:
50.0
P2RY8
ENSSSCG00000035911
ENSG00000182162
P2Y receptor family member 8
Tissue enhanced
Detected in many
lymphoid tissue:
43.0
upper respiratory system:
30.2
PAEP
ENSSSCG00000040042
ENSG00000122133
Beta-lactoglobulin-1A/1C
Tissue enriched
Detected in some
breast:
314.8
PARPBP
ENSSSCG00000000859
ENSG00000185480
PARP1 binding protein
Tissue enhanced
Detected in many
lymphoid tissue:
15.1
testis:
11.2
PAX1
ENSSSCG00000007112
ENSG00000125813
Paired box 1
Group enriched
Detected in some
lymphoid tissue:
31.8
upper respiratory system:
8.4
PAX3
ENSSSCG00000028418
ENSG00000135903
Paired box 3
Tissue enhanced
Detected in some
mouth:
18.8
pineal gland:
7.7
upper respiratory system:
37.7
PAX5
ENSSSCG00000036086
ENSG00000196092
Paired box 5
Tissue enhanced
Detected in some
lymphoid tissue:
69.4
upper respiratory system:
37.6
PAX6
ENSSSCG00000013320
ENSG00000007372
Paired box protein Pax-6 isoform 1
Tissue enhanced
Detected in some
cornea:
121.0
lens:
48.8
retina:
31.4
PAX7
ENSSSCG00000034627
ENSG00000009709
Paired box 7
Tissue enhanced
Detected in some
pituitary gland:
23.9
skeletal muscle:
8.1
upper respiratory system:
26.1
PCDH18
ENSSSCG00000032749
ENSG00000189184
Protocadherin 18
Low tissue specificity
Detected in many
PCDH9
ENSSSCG00000038842
ENSG00000184226
Protocadherin 9
Group enriched
Detected in many
brain:
123.4
pineal gland:
30.8
PCLAF
ENSSSCG00000004554
ENSG00000166803
PCNA-associated factor
Tissue enhanced
Detected in many
lymphoid tissue:
41.0
PCNA
ENSSSCG00000030642
ENSG00000132646
Proliferating cell nuclear antigen
Tissue enhanced
Detected in all
lymphoid tissue:
46.8
PCP4
ENSSSCG00000037110
ENSG00000183036
Purkinje cell protein 4
Tissue enhanced
Detected in many
brain:
191.5
cervix:
123.3
choroid plexus:
146.3
pineal gland:
203.2
PDE10A
ENSSSCG00000004027
ENSG00000112541
Phosphodiesterase 10A
Tissue enhanced
Detected in many
brain:
69.6
PDE7B
ENSSSCG00000004165
ENSG00000171408
Phosphodiesterase 7B
Low tissue specificity
Detected in all
PEG10
ENSSSCG00000036049
ENSG00000242265
Sus scrofa paternally expressed 10 (PEG10), transcript variant 2, mRNA.
Group enriched
Detected in many
brain:
98.3
pituitary gland:
71.1
PFN2
ENSSSCG00000030260
ENSG00000070087
Profilin 2
Tissue enhanced
Detected in all
brain:
94.9
lens:
57.1
PGAM2
ENSSSCG00000016720
ENSG00000164708
Phosphoglycerate mutase 2
Tissue enriched
Detected in some
skeletal muscle:
191.4
PGM5
ENSSSCG00000005243
ENSG00000154330
Phosphoglucomutase 5
Tissue enhanced
Detected in many
ductus deferens:
87.8
smooth muscle:
116.8
urinary bladder:
103.9
PHEROC
ENSSSCG00000013067
ENSG00000110484
Pheromaxein C subunit precursor
Tissue enriched
Detected in some
salivary gland:
801.2
PHEX
ENSSSCG00000012167
ENSG00000102174
Phosphate-regulating neutral endopeptidase
Tissue enhanced
Detected in many
aorta:
17.9
upper respiratory system:
18.1
PICK1
ENSSSCG00000000114
ENSG00000100151
Protein interacting with PRKCA 1
Tissue enhanced
Detected in all
vagus nerve:
71.9
PIGR
ENSSSCG00000015657
ENSG00000162896
Polymeric immunoglobulin receptor precursor
Tissue enhanced
Detected in some
large intestine:
90.9
small intestine:
256.4
stomach:
136.2
upper respiratory system:
337.1
PLA2G2D
ENSSSCG00000031106
ENSG00000117215
Group IID secretory phospholipase A2 precursor
Tissue enhanced
Detected in some
large intestine:
11.1
lymphoid tissue:
41.0
small intestine:
11.9
upper respiratory system:
14.0
PLAC8
ENSSSCG00000009240
ENSG00000145287
Placenta specific 8
Group enriched
Detected in many
adipose tissue:
33.1
lymphoid tissue:
51.6
mesothelial tissue:
49.4
PLCB1
ENSSSCG00000007056
ENSG00000182621
Phospholipase C beta 1
Tissue enhanced
Detected in many
male glands:
57.8
PLEK
ENSSSCG00000008348
ENSG00000115956
Pleckstrin
Tissue enhanced
Detected in many
lung:
13.0
lymphoid tissue:
19.5
PLEKHG1
ENSSSCG00000032778
ENSG00000120278
Pleckstrin homology and RhoGEF domain containing G1
Tissue enhanced
Detected in all
epididymis:
44.9
PLIN4
ENSSSCG00000013512
ENSG00000167676
Perilipin 4
Tissue enhanced
Detected in many
adipose tissue:
121.5
aorta:
63.1
bone marrow:
45.7
PLOD2
ENSSSCG00000011689
ENSG00000152952
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2
Tissue enhanced
Detected in many
cartilage:
73.6
POF1B
ENSSSCG00000012462
ENSG00000124429
POF1B, actin binding protein
Tissue enhanced
Detected in some
cornea:
20.6
large intestine:
32.9
small intestine:
16.4
stomach:
27.4
upper respiratory system:
14.5
POLD1
ENSSSCG00000003216
ENSG00000062822
DNA polymerase delta 1, catalytic subunit
Low tissue specificity
Detected in all
POLE
ENSSSCG00000033051
ENSG00000177084
DNA polymerase epsilon, catalytic subunit
Tissue enhanced
Detected in many
lymphoid tissue:
17.5
POU2AF1
ENSSSCG00000015016
ENSG00000110777
POU domain class 2-associating factor 1
Tissue enhanced
Detected in some
lung:
22.4
lymphoid tissue:
54.3
small intestine:
20.6
upper respiratory system:
48.9
POU2F2
ENSSSCG00000037132
ENSG00000028277
POU domain, class 2, transcription factor 2
Tissue enhanced
Detected in many
lymphoid tissue:
56.2
stomach:
25.0
upper respiratory system:
25.1
PPARGC1A
ENSSSCG00000029275
ENSG00000109819
Peroxisome proliferator-activated receptor gamma coactivator 1-alpha
Tissue enhanced
Detected in many
kidney:
43.3
male glands:
65.2
salivary gland:
35.2
PPP1R14A
ENSSSCG00000038077
ENSG00000167641
Protein phosphatase 1 regulatory subunit 14A
Tissue enhanced
Detected in all
brain:
87.2
smooth muscle:
60.9
PPP1R3C
ENSSSCG00000010464
ENSG00000119938
Protein phosphatase 1 regulatory subunit 3C
Tissue enhanced
Detected in many
cartilage:
76.4
cornea:
52.4
heart:
76.5
PPP2R2B
ENSSSCG00000028976
ENSG00000156475
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform
Tissue enhanced
Detected in many
brain:
38.4
cornea:
32.3
lens:
62.1
retina:
33.4
PRDM6
ENSSSCG00000014238
ENSG00000061455
PR/SET domain 6
Tissue enhanced
Detected in many
cervix:
23.2
smooth muscle:
34.7
urinary bladder:
29.3
PRELP
ENSSSCG00000015271
ENSG00000188783
Proline and arginine rich end leucine rich repeat protein
Tissue enriched
Detected in many
cartilage:
236.7
PROM2
ENSSSCG00000008118
ENSG00000155066
Prominin 2
Tissue enhanced
Detected in many
cornea:
71.6
stomach:
54.5
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