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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Subclass
Class
Biological process
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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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240 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000035435
Tissue enriched
Detected in some
skin:
543.8
na
ENSSSCG00000036484
Tissue enriched
Detected in single
skin:
544.6
na
ENSSSCG00000036507
Tissue enhanced
Detected in some
cornea:
41.3
retina:
47.7
na
ENSSSCG00000036741
ENSG00000069011
Pituitary homeobox 1
Tissue enhanced
Detected in many
cartilage:
30.2
male glands:
87.0
mouth:
33.4
salivary gland:
41.5
stomach:
37.4
na
ENSSSCG00000036999
ENSG00000171195
Tissue enriched
Detected in some
salivary gland:
803.4
na
ENSSSCG00000037194
ENSG00000165775
Tissue enhanced
Detected in many
epididymis:
29.2
na
ENSSSCG00000037222
Tissue enriched
Detected in some
skin:
181.3
na
ENSSSCG00000037735
ENSG00000182782,ENSG00000255398
Tissue enhanced
Detected in many
cornea:
51.2
upper respiratory system:
14.3
na
ENSSSCG00000038121
ENSG00000159450
Group enriched
Detected in some
mouth:
37.6
skin:
117.4
na
ENSSSCG00000038127
Tissue enhanced
Detected in some
mouth:
39.5
skin:
7.4
testis:
14.6
na
ENSSSCG00000038434
Tissue enhanced
Detected in many
retina:
25.1
na
ENSSSCG00000039352
Tissue enriched
Detected in some
mouth:
28.9
na
ENSSSCG00000039443
Low tissue specificity
Detected in all
na
ENSSSCG00000039506
ENSG00000196465
Group enriched
Detected in many
skeletal muscle:
201.5
synovial tissue:
57.6
na
ENSSSCG00000039927
Tissue enriched
Detected in some
skin:
514.3
na
ENSSSCG00000040549
Tissue enhanced
Detected in many
male glands:
28.7
na
ENSSSCG00000040885
ENSG00000255552
Tissue enhanced
Detected in many
aorta:
12.9
cornea:
11.2
lymphoid tissue:
19.8
NEGR1
ENSSSCG00000025085
ENSG00000172260
Neuronal growth regulator 1
Tissue enhanced
Detected in many
brain:
65.6
pineal gland:
21.1
pituitary gland:
20.4
retina:
20.9
NELL1
ENSSSCG00000039940
ENSG00000165973
Neural EGFL like 1
Tissue enhanced
Detected in many
brain:
22.0
pineal gland:
18.5
NKX6-1
ENSSSCG00000009232
ENSG00000163623
NK6 homeobox 1
Tissue enhanced
Detected in some
brain:
11.8
mouth:
7.0
upper respiratory system:
23.9
NUPR1
ENSSSCG00000040162
ENSG00000176046
Nuclear protein 1, transcriptional regulator
Tissue enhanced
Detected in many
kidney:
107.6
liver:
104.2
salivary gland:
176.4
OCIAD2
ENSSSCG00000008829
ENSG00000145247
OCIA domain containing 2
Tissue enhanced
Detected in all
liver:
55.0
P14ARF
ENSSSCG00000005134
ENSG00000147889
P14ARF protein
Tissue enriched
Detected in many
testis:
66.5
P2RX1
ENSSSCG00000022405
ENSG00000108405
Purinergic receptor P2X 1
Tissue enhanced
Detected in many
penis:
89.2
urinary bladder:
37.3
PAX3
ENSSSCG00000028418
ENSG00000135903
Paired box 3
Tissue enhanced
Detected in some
mouth:
18.8
pineal gland:
7.7
upper respiratory system:
37.7
PAX9
ENSSSCG00000001942
ENSG00000198807
Paired box 9
Group enriched
Detected in some
esophagus:
41.4
male glands:
77.7
mouth:
25.3
salivary gland:
21.1
upper respiratory system:
33.8
PENK
ENSSSCG00000006243
ENSG00000181195
Proenkephalin
Tissue enhanced
Detected in many
adrenal gland:
92.5
brain:
162.9
PGLYRP3
ENSSSCG00000027322
ENSG00000159527
Peptidoglycan recognition protein 3 precursor
Tissue enhanced
Detected in some
cornea:
11.7
large intestine:
9.4
mouth:
15.6
skin:
9.4
PGLYRP4
ENSSSCG00000006587
ENSG00000163218
Peptidoglycan recognition protein 4
Tissue enhanced
Detected in all
mouth:
22.8
PHEROC
ENSSSCG00000013067
ENSG00000110484
Pheromaxein C subunit precursor
Tissue enriched
Detected in some
salivary gland:
801.2
PLIN1
ENSSSCG00000001844
ENSG00000166819
Perilipin-1
Group enriched
Detected in many
adipose tissue:
207.5
aorta:
81.3
bone marrow:
108.1
POSTN
ENSSSCG00000009361
ENSG00000133110
Periostin isoform 1 precursor
Tissue enhanced
Detected in many
dura mater:
121.6
gallbladder:
82.5
mesothelial tissue:
89.0
upper respiratory system:
88.5
POU2F3
ENSSSCG00000028237
ENSG00000137709
POU class 2 homeobox 3
Group enriched
Detected in some
breast:
35.7
skin:
88.7
PPP1R1B
ENSSSCG00000017498
ENSG00000131771
Protein phosphatase 1 regulatory inhibitor subunit 1B
Tissue enhanced
Detected in many
brain:
198.3
choroid plexus:
83.9
male glands:
76.8
PRDM6
ENSSSCG00000014238
ENSG00000061455
PR/SET domain 6
Tissue enhanced
Detected in many
cervix:
23.2
smooth muscle:
34.7
urinary bladder:
29.3
PRR32
ENSSSCG00000012647
ENSG00000183631
Proline rich 32
Tissue enriched
Detected in some
mouth:
16.9
PRTN3
ENSSSCG00000013417
ENSG00000196415
Proteinase 3
Tissue enriched
Detected in some
bone marrow:
129.5
RASGRP1
ENSSSCG00000004791
ENSG00000172575
RAS guanyl releasing protein 1
Tissue enhanced
Detected in many
brain:
41.1
lymphoid tissue:
37.1
RBP1
ENSSSCG00000011664
ENSG00000114115
Retinol-binding protein 1
Tissue enhanced
Detected in many
choroid plexus:
50.2
cornea:
58.8
RERG
ENSSSCG00000000602
ENSG00000134533
RAS like estrogen regulated growth inhibitor
Tissue enhanced
Detected in many
adrenal gland:
59.8
cervix:
47.5
RHCG
ENSSSCG00000001841
ENSG00000140519
Ammonium transporter Rh type C
Tissue enhanced
Detected in many
kidney:
19.8
mouth:
44.9
ovary:
27.8
RIMKLA
ENSSSCG00000003968
ENSG00000177181
Ribosomal modification protein rimK like family member A
Tissue enhanced
Detected in many
brain:
16.0
lens:
8.9
mouth:
8.9
retina:
8.9
RNF223
ENSSSCG00000034107
ENSG00000237330
Ring finger protein 223
Tissue enhanced
Detected in many
mouth:
29.3
stomach:
19.8
RRAD
ENSSSCG00000036060
ENSG00000166592
RRAD, Ras related glycolysis inhibitor and calcium channel regulator
Group enriched
Detected in many
heart:
65.8
skeletal muscle:
23.4
RSPO4
ENSSSCG00000007197
ENSG00000101282
R-spondin 4
Tissue enriched
Detected in some
synovial tissue:
33.8
RXFP4
ENSSSCG00000006503
ENSG00000173080
Relaxin-3 receptor 2
Tissue enhanced
Detected in many
cartilage:
15.9
S100A12
ENSSSCG00000032857
ENSG00000163221
Protein S100-A12
Tissue enriched
Detected in some
cornea:
228.2
S100A14
ENSSSCG00000006582
ENSG00000189334
Protein S100-A14
Tissue enhanced
Detected in many
brain:
42.6
cornea:
41.1
mouth:
54.2
stomach:
44.6
S100A2
ENSSSCG00000006580
ENSG00000196754
S100 calcium binding protein A2
Tissue enhanced
Detected in many
mouth:
105.0
skin:
69.0
S100A4
ENSSSCG00000006578
ENSG00000196154
Protein S100-A4
Tissue enriched
Detected in many
lens:
255.7
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