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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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240 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
S100A8
ENSSSCG00000006590
ENSG00000143546
Protein S100-A8
Group enriched
Detected in some
cornea:
459.9
mouth:
180.6
S100A9
ENSSSCG00000006588
ENSG00000163220
RNA-binding region containing protein 2-like
Tissue enhanced
Detected in some
bone marrow:
31.5
cornea:
126.7
mouth:
117.6
SAL1
ENSSSCG00000005474
Salivary lipocalin precursor
Tissue enriched
Detected in some
salivary gland:
3149.4
SBK2
ENSSSCG00000033532
ENSG00000187550
SH3 domain binding kinase family member 2
Tissue enhanced
Detected in many
heart:
32.6
mouth:
24.9
skeletal muscle:
33.9
SBSN
ENSSSCG00000033702
ENSG00000189001
Suprabasin
Tissue enhanced
Detected in many
cornea:
17.8
mouth:
52.8
skin:
25.2
SCNN1A
ENSSSCG00000000707
ENSG00000111319
Amiloride-sensitive sodium channel subunit alpha
Tissue enhanced
Detected in many
kidney:
33.8
male glands:
40.2
stomach:
37.7
SERPINB1
ENSSSCG00000001011
ENSG00000021355
Serpin family B member 1
Tissue enriched
Detected in many
lens:
240.5
SERPINB13
ENSSSCG00000034519
ENSG00000197641
Serpin family B member 13
Tissue enriched
Detected in some
skin:
43.1
SFRP2
ENSSSCG00000009004
ENSG00000145423
Secreted frizzled-related protein 2 precursor
Tissue enhanced
Detected in many
dura mater:
179.5
retina:
111.4
SHOX2
ENSSSCG00000025238
ENSG00000168779
Short stature homeobox protein 2
Tissue enhanced
Detected in many
bone marrow:
18.6
synovial tissue:
45.8
SIM2
ENSSSCG00000027179
ENSG00000159263
Single-minded family bHLH transcription factor 2
Tissue enhanced
Detected in some
esophagus:
46.7
male glands:
42.5
stomach:
44.6
SLC25A21
ENSSSCG00000039317
ENSG00000183032
Solute carrier family 25 member 21
Tissue enhanced
Detected in many
liver:
17.3
thyroid gland:
29.1
SLC9A3R1
ENSSSCG00000017232
ENSG00000109062
Na(+)/H(+) exchange regulatory cofactor NHE-RF1
Tissue enhanced
Detected in many
kidney:
85.7
SLFNL1
ENSSSCG00000003972
ENSG00000171790
Schlafen like 1
Tissue enhanced
Detected in many
testis:
42.8
SMIM32
ENSSSCG00000040031
ENSG00000271824
Small integral membrane protein 32
Tissue enhanced
Detected in many
brain:
27.6
male glands:
20.0
pineal gland:
19.9
SOSTDC1
ENSSSCG00000021126
ENSG00000171243
Sclerostin domain containing 1
Group enriched
Detected in many
choroid plexus:
65.3
smooth muscle:
39.8
urinary bladder:
19.7
SPATA22
ENSSSCG00000029709
ENSG00000141255
Spermatogenesis-associated protein 22
Tissue enriched
Detected in some
testis:
62.2
SPINK5
ENSSSCG00000014422
ENSG00000133710
Serine peptidase inhibitor, Kazal type 5
Tissue enhanced
Detected in some
esophagus:
19.0
mouth:
96.6
skin:
26.0
SPOCK3
ENSSSCG00000009722
ENSG00000196104
SPARC/osteonectin, cwcv and kazal like domains proteoglycan 3
Group enriched
Detected in some
brain:
32.3
pituitary gland:
47.7
retina:
17.7
thyroid gland:
37.7
SRCIN1
ENSSSCG00000018056
ENSG00000277363
SRC kinase signaling inhibitor 1
Group enriched
Detected in many
brain:
42.1
skin:
49.3
STAP2
ENSSSCG00000013506
ENSG00000178078
Signal transducing adaptor family member 2
Tissue enhanced
Detected in many
male glands:
21.4
small intestine:
30.3
SULT2B1
ENSSSCG00000023280
ENSG00000088002
Sulfotransferase family cytosolic 2B member 1
Tissue enhanced
Detected in many
ductus deferens:
19.4
mouth:
37.2
upper respiratory system:
26.7
TACSTD2
ENSSSCG00000003832
ENSG00000184292
Tumor associated calcium signal transducer 2
Tissue enhanced
Detected in many
cornea:
60.8
upper respiratory system:
52.2
urinary bladder:
76.7
TBX18
ENSSSCG00000004290
ENSG00000112837
T-box 18
Tissue enriched
Detected in many
cartilage:
52.6
TCHHL1
ENSSSCG00000006609
ENSG00000182898
Trichohyalin like 1
Tissue enhanced
Detected in some
epididymis:
6.6
male glands:
10.5
mouth:
8.4
skin:
13.3
TGM7
ENSSSCG00000004712
ENSG00000159495
Transglutaminase 7
Group enriched
Detected in some
mouth:
20.6
skin:
14.9
TLX1
ENSSSCG00000010561
ENSG00000107807
T cell leukemia homeobox 1
Group enriched
Detected in some
lymphoid tissue:
36.2
salivary gland:
42.5
TMEM54
ENSSSCG00000026455
ENSG00000121900
Transmembrane protein 54
Group enriched
Detected in many
large intestine:
74.6
stomach:
93.8
TMPRSS11A
ENSSSCG00000008927
ENSG00000187054
Transmembrane serine protease 11A
Tissue enhanced
Detected in some
esophagus:
10.8
lymphoid tissue:
15.1
mouth:
47.3
upper respiratory system:
23.3
TNC
ENSSSCG00000005494
ENSG00000041982
Tenascin precursor
Tissue enhanced
Detected in many
cartilage:
169.5
smooth muscle:
64.2
synovial tissue:
56.1
TNNC1
ENSSSCG00000011441
ENSG00000114854
Troponin C, slow skeletal and cardiac muscles
Group enriched
Detected in some
heart:
332.4
skeletal muscle:
388.6
TNNI1
ENSSSCG00000024061
ENSG00000159173
Troponin I, slow skeletal muscle
Tissue enriched
Detected in some
skeletal muscle:
417.5
TNNT1
ENSSSCG00000025353
ENSG00000105048
Troponin T, slow skeletal muscle
Tissue enriched
Detected in some
skeletal muscle:
407.0
TPMT
ENSSSCG00000001073
ENSG00000137364
Thiopurine S-methyltransferase
Tissue enhanced
Detected in many
pineal gland:
22.5
TUSC5
ENSSSCG00000017801
ENSG00000184811
Tumor suppressor candidate 5
Tissue enhanced
Detected in many
adipose tissue:
114.0
aorta:
57.8
bone marrow:
47.3
VMO1
ENSSSCG00000017915
ENSG00000182853
Vitelline membrane outer layer protein 1 homolog precursor
Group enriched
Detected in many
salivary gland:
21.5
upper respiratory system:
61.2
VSIG8
ENSSSCG00000006399
ENSG00000243284
V-set and immunoglobulin domain containing 8
Tissue enriched
Detected in some
skin:
108.6
VSNL1
ENSSSCG00000008615
ENSG00000163032
Visinin like 1
Group enriched
Detected in some
brain:
96.6
pineal gland:
24.9
ZDHHC18
ENSSSCG00000003561
ENSG00000204160
Zinc finger DHHC-type containing 18
Group enriched
Detected in many
cornea:
91.4
mouth:
54.1
skin:
71.4
urinary bladder:
33.8
ZNF385C
ENSSSCG00000028051
ENSG00000187595
Zinc finger protein 385C
Tissue enhanced
Detected in many
cartilage:
30.6
stomach:
61.6
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