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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Digestive system diseases
Endocrine and metabolic diseases
Immune system diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
Urinary system diseases
Subclass
Class
Biological process
Molecular function
Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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240 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
KRT78
ENSSSCG00000036791
ENSG00000170423
Keratin 78
Tissue enriched
Detected in some
mouth:
131.9
KRT82
ENSSSCG00000000235
ENSG00000161850
Keratin 82
Tissue enriched
Detected in some
skin:
96.1
KRT84
ENSSSCG00000000241
ENSG00000161849
Keratin 84
Tissue enriched
Detected in single
mouth:
103.6
KRT85
ENSSSCG00000000240
ENSG00000135443
Keratin 85
Tissue enriched
Detected in some
skin:
167.0
KRTAP3-1
ENSSSCG00000017450
ENSG00000212901
Keratin associated protein 3-1
Tissue enriched
Detected in some
skin:
559.8
LGALS4
ENSSSCG00000022017
ENSG00000171747
Galectin-4
Tissue enhanced
Detected in some
large intestine:
131.5
mouth:
193.3
small intestine:
49.3
stomach:
77.7
LGR5
ENSSSCG00000030511
ENSG00000139292
Leucine-rich repeat-containing G-protein coupled receptor 5 precursor
Tissue enhanced
Detected in many
skin:
34.4
LHX2
ENSSSCG00000005586
ENSG00000106689
LIM/homeobox protein Lhx2
Tissue enhanced
Detected in some
brain:
29.0
pituitary gland:
11.4
retina:
10.0
skin:
21.3
LY6G6C
ENSSSCG00000036566
ENSG00000204421
Lymphocyte antigen 6 family member G6C
Group enriched
Detected in some
cornea:
9.4
mouth:
31.3
skin:
15.0
testis:
33.3
LYPD2
ENSSSCG00000036119
ENSG00000197353
LY6/PLAUR domain containing 2
Tissue enriched
Detected in some
cornea:
126.7
MKX
ENSSSCG00000029783
ENSG00000150051
Mohawk homeobox
Tissue enhanced
Detected in many
cartilage:
33.3
penis:
37.4
MMP23B
ENSSSCG00000003351
ENSG00000189409
Matrix metallopeptidase 23B
Tissue enhanced
Detected in many
cartilage:
53.6
MORN3
ENSSSCG00000009809
ENSG00000139714
MORN repeat-containing protein 3
Tissue enhanced
Detected in many
fallopian tube:
12.9
testis:
20.8
upper respiratory system:
24.9
MSX1
ENSSSCG00000008727
ENSG00000163132
Homeobox protein MSX-1
Tissue enhanced
Detected in many
choroid plexus:
36.0
endometrium:
42.5
penis:
30.6
MT4
ENSSSCG00000031359
ENSG00000102891
Metallothionein 4
Tissue enriched
Detected in some
skin:
92.6
MYH4
ENSSSCG00000018003
ENSG00000264424
Myosin-4
Tissue enriched
Detected in some
skeletal muscle:
262.5
MYH7
ENSSSCG00000002029
ENSG00000197616
Myosin-7
Group enriched
Detected in some
heart:
575.2
skeletal muscle:
287.0
MYL3
ENSSSCG00000011325
ENSG00000160808
Myosin light chain 3
Group enriched
Detected in some
heart:
596.1
skeletal muscle:
418.9
na
ENSSSCG00000000239
Tissue enriched
Detected in single
skin:
274.8
na
ENSSSCG00000000245
ENSG00000170465,ENSG00000205420
Group enriched
Detected in some
mouth:
222.9
skin:
58.5
na
ENSSSCG00000000247
Tissue enriched
Detected in some
skin:
152.9
na
ENSSSCG00000000664
ENSG00000166535
Tissue enriched
Detected in some
mouth:
129.0
na
ENSSSCG00000003049
ENSG00000268041
Tissue enhanced
Detected in many
cartilage:
24.1
lymphoid tissue:
27.8
na
ENSSSCG00000004666
ENSG00000137767,ENSG00000260170
Sulfide:quinone oxidoreductase, mitochondrial
Tissue enhanced
Detected in all
large intestine:
94.8
na
ENSSSCG00000006581
ENSG00000188643
Protein S100-A16
Tissue enhanced
Detected in all
brain:
124.8
mouth:
84.1
na
ENSSSCG00000006592
Tissue enriched
Detected in some
mouth:
258.3
na
ENSSSCG00000006605
ENSG00000215853
Tissue enriched
Detected in some
mouth:
21.3
na
ENSSSCG00000016400
ENSG00000172478
Tissue enhanced
Detected in many
heart:
13.5
lung:
10.3
mouth:
24.0
skin:
13.3
na
ENSSSCG00000016493
ENSG00000261115
Tissue enhanced
Detected in many
brain:
32.9
na
ENSSSCG00000023406
ENSG00000169469,ENSG00000169474
Tissue enriched
Detected in some
mouth:
1031.1
na
ENSSSCG00000023467
Tissue enhanced
Detected in all
mouth:
95.4
na
ENSSSCG00000024336
ENSG00000184012
Tissue enhanced
Detected in many
kidney:
36.9
male glands:
92.6
na
ENSSSCG00000026339
ENSG00000188100,ENSG00000189090,ENSG00000276430
Tissue enriched
Detected in some
mouth:
170.0
na
ENSSSCG00000028768
Tissue enriched
Detected in some
skin:
123.6
na
ENSSSCG00000029449
ENSG00000116690
Tissue enriched
Detected in some
cartilage:
708.5
na
ENSSSCG00000031087
Tissue enhanced
Detected in some
male glands:
46.7
salivary gland:
151.4
upper respiratory system:
148.7
na
ENSSSCG00000031529
Interferon omega 1 precursor
Tissue enhanced
Detected in many
skin:
23.5
na
ENSSSCG00000031579
ENSG00000248485
Group enriched
Detected in many
brain:
69.5
lens:
134.7
na
ENSSSCG00000031623
Tissue enhanced
Detected in many
mouth:
159.7
pituitary gland:
59.9
na
ENSSSCG00000031706
Tissue enhanced
Detected in many
large intestine:
20.9
male glands:
30.3
na
ENSSSCG00000031933
ENSG00000185960
Tissue enhanced
Detected in some
brain:
6.4
cornea:
19.2
penis:
21.9
na
ENSSSCG00000031943
Tissue enhanced
Detected in many
brain:
37.2
epididymis:
27.3
pituitary gland:
20.6
retina:
31.2
na
ENSSSCG00000032780
Tissue enriched
Detected in some
skin:
153.0
na
ENSSSCG00000034157
Tissue enhanced
Detected in many
adrenal gland:
37.6
brain:
29.3
pineal gland:
19.7
retina:
22.0
na
ENSSSCG00000034204
Group enriched
Detected in some
pineal gland:
16.8
retina:
62.6
na
ENSSSCG00000034279
ENSG00000204544
Group enriched
Detected in some
cornea:
119.5
mouth:
81.3
na
ENSSSCG00000034371
Tissue enhanced
Detected in many
salivary gland:
100.6
upper respiratory system:
69.5
na
ENSSSCG00000035239
Low tissue specificity
Detected in many
na
ENSSSCG00000035316
Tissue enhanced
Detected in many
mouth:
18.4
na
ENSSSCG00000035404
Tissue enhanced
Detected in many
ductus deferens:
22.5
epididymis:
42.8
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