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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Biological process
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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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240 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
EGLN3
ENSSSCG00000001963
ENSG00000129521
Egl-9 family hypoxia inducible factor 3
Tissue enhanced
Detected in many
lens:
59.1
ELF3
ENSSSCG00000010922
ENSG00000163435
E74 like ETS transcription factor 3
Tissue enhanced
Detected in many
large intestine:
35.4
stomach:
54.7
upper respiratory system:
50.1
urinary bladder:
61.1
EPN3
ENSSSCG00000027226
ENSG00000049283
Epsin 3
Tissue enhanced
Detected in many
kidney:
33.8
male glands:
29.5
salivary gland:
24.1
stomach:
33.2
thyroid gland:
22.0
EPS8L2
ENSSSCG00000012848
ENSG00000177106
EPS8 like 2
Tissue enhanced
Detected in many
stomach:
77.6
ETHE1
ENSSSCG00000003064
ENSG00000105755
ETHE1, persulfide dioxygenase
Tissue enriched
Detected in all
large intestine:
109.6
EXTL1
ENSSSCG00000029558
ENSG00000158008
Exostosin like glycosyltransferase 1
Group enriched
Detected in many
cartilage:
76.1
liver:
72.3
FAM184A
ENSSSCG00000004245
ENSG00000111879
Family with sequence similarity 184 member A
Tissue enhanced
Detected in many
brain:
25.4
choroid plexus:
25.7
testis:
17.6
FCN2
ENSSSCG00000023333
Ficolin-2 precursor
Tissue enhanced
Detected in many
adipose tissue:
64.7
large intestine:
57.6
small intestine:
75.4
stomach:
99.9
vagus nerve:
43.5
FOXA1
ENSSSCG00000037634
ENSG00000129514
Forkhead box A1
Tissue enhanced
Detected in many
breast:
20.5
esophagus:
19.7
male glands:
38.3
upper respiratory system:
22.5
FUT2
ENSSSCG00000003145
ENSG00000176920
Galactoside 2-alpha-L-fucosyltransferase 2
Tissue enhanced
Detected in many
stomach:
75.6
GALNT3
ENSSSCG00000015907
ENSG00000115339
Polypeptide N-acetylgalactosaminyltransferase 3
Tissue enhanced
Detected in many
male glands:
44.6
testis:
29.6
GALNT6
ENSSSCG00000026890
ENSG00000139629
Polypeptide N-acetylgalactosaminyltransferase 6
Tissue enhanced
Detected in many
esophagus:
50.7
male glands:
89.3
salivary gland:
53.5
GFRA3
ENSSSCG00000014328
ENSG00000146013
GDNF family receptor alpha 3
Tissue enhanced
Detected in many
adipose tissue:
31.5
brain:
27.3
small intestine:
32.3
vagus nerve:
24.9
GLIS1
ENSSSCG00000003846
ENSG00000174332
GLIS family zinc finger 1
Tissue enhanced
Detected in many
cartilage:
36.5
ductus deferens:
36.4
kidney:
25.7
GLP2R
ENSSSCG00000017998
ENSG00000065325
Glucagon-like peptide 2 receptor
Tissue enhanced
Detected in many
gallbladder:
27.6
urinary bladder:
21.1
GPR1
ENSSSCG00000016129
ENSG00000183671
G-protein coupled receptor 1
Tissue enriched
Detected in all
synovial tissue:
71.3
GREM1
ENSSSCG00000033657
ENSG00000166923
Gremlin 1, DAN family BMP antagonist
Tissue enhanced
Detected in many
cartilage:
38.7
gallbladder:
38.9
kidney:
37.6
small intestine:
50.0
smooth muscle:
39.8
GRHL3
ENSSSCG00000003539
ENSG00000158055
Grainyhead like transcription factor 3
Tissue enhanced
Detected in many
mouth:
38.4
urinary bladder:
24.1
GSC
ENSSSCG00000002490
ENSG00000133937
Goosecoid homeobox
Tissue enhanced
Detected in some
adipose tissue:
13.4
aorta:
8.0
mesothelial tissue:
14.0
mouth:
8.2
upper respiratory system:
14.1
HAND2
ENSSSCG00000031537
ENSG00000164107
Heart and neural crest derivatives expressed 2
Tissue enhanced
Detected in many
adrenal gland:
35.3
gallbladder:
38.2
heart:
75.3
HBQ1
ENSSSCG00000038804
ENSG00000086506
Hemoglobin subunit theta 1
Low tissue specificity
Detected in many
HEPH
ENSSSCG00000012363
ENSG00000089472
Hephaestin
Group enriched
Detected in some
large intestine:
30.8
pituitary gland:
10.2
small intestine:
19.9
HEPHL1
ENSSSCG00000030461
ENSG00000181333
Hephaestin like 1
Tissue enriched
Detected in some
skin:
54.6
HHIP
ENSSSCG00000009045
ENSG00000164161
Hedgehog interacting protein
Tissue enhanced
Detected in many
cartilage:
79.0
lymphoid tissue:
59.2
HIF3A
ENSSSCG00000003101
ENSG00000124440
Hypoxia inducible factor 3 alpha subunit
Tissue enhanced
Detected in many
breast:
38.6
heart:
44.0
HPSE2
ENSSSCG00000010535
ENSG00000172987
Heparanase 2 (inactive)
Tissue enriched
Detected in many
cervix:
86.3
HTATIP2
ENSSSCG00000013349
ENSG00000109854
HIV-1 Tat interactive protein 2
Tissue enhanced
Detected in many
stomach:
73.6
IFNE
ENSSSCG00000005136
ENSG00000184995
Interferon epsilon
Tissue enhanced
Detected in many
skin:
31.1
thyroid gland:
27.4
INPP5J
ENSSSCG00000030345
ENSG00000185133
Inositol polyphosphate-5-phosphatase J
Tissue enhanced
Detected in many
brain:
29.6
stomach:
22.1
IRX1
ENSSSCG00000034884
ENSG00000170549
Iroquois homeobox 1
Tissue enhanced
Detected in many
breast:
42.9
esophagus:
28.4
salivary gland:
50.8
skin:
34.9
IRX2
ENSSSCG00000032074
ENSG00000170561
Iroquois homeobox 2
Tissue enhanced
Detected in many
breast:
24.7
salivary gland:
26.6
IRX3
ENSSSCG00000002831
ENSG00000177508
Iroquois homeobox 3
Tissue enhanced
Detected in many
breast:
24.6
male glands:
63.3
IRX4
ENSSSCG00000017112
ENSG00000113430
Iroquois homeobox 4
Tissue enhanced
Detected in some
breast:
9.3
heart:
23.8
mouth:
7.5
skin:
17.5
IRX5
ENSSSCG00000032145
ENSG00000176842
Iroquois homeobox 5
Tissue enhanced
Detected in many
breast:
32.9
male glands:
51.4
ISL1
ENSSSCG00000016883
ENSG00000016082
ISL LIM homeobox 1
Tissue enhanced
Detected in many
male glands:
16.6
penis:
36.4
ISL2
ENSSSCG00000033348
ENSG00000159556
ISL LIM homeobox 2
Group enriched
Detected in some
penis:
20.6
pineal gland:
42.3
IVL
ENSSSCG00000006595
ENSG00000163207
Involucrin
Group enriched
Detected in some
mouth:
120.0
skin:
90.2
KCNA1
ENSSSCG00000000716
ENSG00000111262
Potassium voltage-gated channel subfamily A member 1
Group enriched
Detected in some
adrenal gland:
64.8
brain:
42.6
KCNN2
ENSSSCG00000014213
ENSG00000080709
Potassium calcium-activated channel subfamily N member 2
Tissue enhanced
Detected in many
adrenal gland:
33.7
liver:
43.1
male glands:
49.4
KRT10
ENSSSCG00000028522
ENSG00000186395
Keratin 10
Group enriched
Detected in many
mouth:
93.8
skin:
212.0
KRT13
ENSSSCG00000017445
ENSG00000171401
Keratin 13
Tissue enriched
Detected in some
mouth:
692.3
KRT24
ENSSSCG00000017465
ENSG00000167916
Keratin 24
Tissue enriched
Detected in many
mouth:
79.2
KRT25
ENSSSCG00000017464
ENSG00000204897
Keratin 25
Tissue enriched
Detected in some
skin:
155.9
KRT3
ENSSSCG00000023254
ENSG00000186442
Keratin 3
Tissue enriched
Detected in some
cornea:
465.8
KRT31
ENSSSCG00000021668
Keratin 31
Tissue enriched
Detected in single
skin:
243.6
KRT35
ENSSSCG00000017438
ENSG00000197079
Keratin 35
Tissue enriched
Detected in some
skin:
115.3
KRT36
ENSSSCG00000017437
ENSG00000126337
Keratin 36
Group enriched
Detected in some
mouth:
83.3
skin:
22.6
KRT4
ENSSSCG00000024610
ENSG00000170477
Keratin 4
Group enriched
Detected in some
esophagus:
91.9
mouth:
354.0
KRT7
ENSSSCG00000038966
ENSG00000135480
Keratin 7
Tissue enhanced
Detected in many
breast:
50.7
gallbladder:
38.2
salivary gland:
40.2
KRT75
ENSSSCG00000000236
ENSG00000170454
Keratin 75
Tissue enriched
Detected in some
skin:
78.0
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