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Chromosome
1
2
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7
8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CENPF
ENSSSCG00000015581
ENSG00000117724
Centromere protein F
Tissue enhanced
Detected in many
large intestine:
19.1
lymphoid tissue:
41.0
testis:
22.4
CENPI
ENSSSCG00000012491
ENSG00000102384
Centromere protein I
Low tissue specificity
Detected in all
CENPL
ENSSSCG00000015496
ENSG00000120334
Centromere protein L
Tissue enhanced
Detected in many
lymphoid tissue:
11.4
testis:
8.4
CENPM
ENSSSCG00000035991
ENSG00000100162
Centromere protein M
Tissue enhanced
Detected in all
lens:
53.2
CENPN
ENSSSCG00000039216
ENSG00000166451
Centromere protein N
Tissue enhanced
Detected in many
choroid plexus:
13.5
CENPT
ENSSSCG00000002768
ENSG00000102901
Centromere protein T
Tissue enhanced
Detected in all
lymphoid tissue:
27.1
testis:
22.3
CENPW
ENSSSCG00000035700
ENSG00000203760
Centromere protein W
Low tissue specificity
Detected in many
CEP112
ENSSSCG00000023992
ENSG00000154240
Centrosomal protein 112
Low tissue specificity
Detected in all
CEP126
ENSSSCG00000014979
ENSG00000110318
Centrosomal protein 126
Tissue enhanced
Detected in many
fallopian tube:
48.2
testis:
40.2
CEP170B
ENSSSCG00000002558
ENSG00000099814
Centrosomal protein 170B
Tissue enhanced
Detected in many
epididymis:
69.4
CEP57L1
ENSSSCG00000004391
ENSG00000183137
Centrosomal protein 57 like 1
Tissue enhanced
Detected in all
testis:
20.6
CEP78
ENSSSCG00000005286
ENSG00000148019
Centrosomal protein 78
Low tissue specificity
Detected in all
CERCAM
ENSSSCG00000005650
ENSG00000167123
Cerebral endothelial cell adhesion molecule
Tissue enhanced
Detected in many
cartilage:
38.6
synovial tissue:
37.8
CFAP126
ENSSSCG00000023957
ENSG00000188931
Cilia and flagella associated protein 126
Tissue enhanced
Detected in all
choroid plexus:
63.1
fallopian tube:
75.7
testis:
53.2
upper respiratory system:
71.6
CFAP57
ENSSSCG00000023904
ENSG00000243710
Cilia and flagella associated protein 57
Tissue enhanced
Detected in some
fallopian tube:
21.1
lymphoid tissue:
21.4
testis:
15.6
upper respiratory system:
14.8
CFAP58
ENSSSCG00000010614
ENSG00000120051
Cilia and flagella associated protein 58
Tissue enhanced
Detected in many
choroid plexus:
23.8
fallopian tube:
22.9
testis:
19.2
CFD
ENSSSCG00000013418
ENSG00000197766
Complement factor D
Tissue enhanced
Detected in many
gallbladder:
125.8
small intestine:
98.3
stomach:
122.6
CFP
ENSSSCG00000012278
ENSG00000126759
Complement factor properdin
Tissue enhanced
Detected in many
lymphoid tissue:
22.0
small intestine:
36.0
stomach:
48.2
CGNL1
ENSSSCG00000035038
ENSG00000128849
Cingulin like 1
Tissue enhanced
Detected in many
kidney:
62.8
thyroid gland:
72.5
CH25H
ENSSSCG00000010449
ENSG00000138135
Cholesterol 25-hydroxylase
Tissue enhanced
Detected in many
epididymis:
43.9
ovary:
26.5
CHAF1B
ENSSSCG00000012056
ENSG00000159259
Chromatin assembly factor 1 subunit B
Tissue enhanced
Detected in many
lymphoid tissue:
15.3
CHCHD10
ENSSSCG00000010073
ENSG00000250479
Coiled-coil-helix-coiled-coil-helix domain containing 10
Tissue enhanced
Detected in all
heart:
175.7
skeletal muscle:
132.4
CHD5
ENSSSCG00000003366
ENSG00000116254
Chromodomain helicase DNA binding protein 5
Tissue enhanced
Detected in many
brain:
26.9
testis:
27.0
CHD7
ENSSSCG00000006231
ENSG00000171316
Chromodomain helicase DNA binding protein 7
Low tissue specificity
Detected in all
CHDH
ENSSSCG00000011456
ENSG00000016391
Choline dehydrogenase
Tissue enhanced
Detected in many
liver:
44.2
CHI3L1
ENSSSCG00000015476
ENSG00000133048
Chitinase-3-like protein 1 precursor
Group enriched
Detected in some
cartilage:
58.5
lung:
39.6
synovial tissue:
21.1
upper respiratory system:
18.7
CHIC2
ENSSSCG00000032645
ENSG00000109220
Cysteine rich hydrophobic domain 2
Tissue enhanced
Detected in all
lymphoid tissue:
39.5
CHRDL1
ENSSSCG00000012576
ENSG00000101938
Chordin like 1
Tissue enhanced
Detected in many
lens:
58.7
CHRM4
ENSSSCG00000013261
ENSG00000180720
Cholinergic receptor muscarinic 4
Group enriched
Detected in some
brain:
17.5
lymphoid tissue:
15.6
CHRNB1
ENSSSCG00000030263
ENSG00000170175
Cholinergic receptor nicotinic beta 1 subunit
Low tissue specificity
Detected in all
CHRNB4
ENSSSCG00000001753
ENSG00000117971
Cholinergic receptor nicotinic beta 4 subunit
Tissue enhanced
Detected in some
cartilage:
23.5
lens:
33.0
CHST10
ENSSSCG00000008175
ENSG00000115526
Carbohydrate sulfotransferase 10
Tissue enhanced
Detected in many
brain:
51.7
CHST15
ENSSSCG00000029482
ENSG00000182022
Carbohydrate sulfotransferase 15
Tissue enhanced
Detected in many
cartilage:
47.5
lymphoid tissue:
44.7
CHST8
ENSSSCG00000035222
ENSG00000124302
Carbohydrate sulfotransferase 8
Tissue enhanced
Detected in some
brain:
11.1
lymphoid tissue:
12.5
pituitary gland:
16.7
testis:
10.1
CHST9
ENSSSCG00000003721
ENSG00000154080
Carbohydrate sulfotransferase 9
Tissue enhanced
Detected in many
endometrium:
15.0
fallopian tube:
29.3
gallbladder:
24.9
pituitary gland:
14.7
CIDEB
ENSSSCG00000001989
ENSG00000136305
Cell death activator CIDE-B
Tissue enhanced
Detected in some
liver:
67.0
small intestine:
23.1
CIITA
ENSSSCG00000007901
ENSG00000179583
MHC class II transactivator
Tissue enhanced
Detected in all
lymphoid tissue:
56.8
CIP2A
ENSSSCG00000033593
ENSG00000163507
Cell proliferation regulating inhibitor of protein phosphatase 2A
Tissue enhanced
Detected in all
lymphoid tissue:
20.0
CISD3
ENSSSCG00000022187
ENSG00000277972
CDGSH iron sulfur domain 3
Low tissue specificity
Detected in all
CITED4
ENSSSCG00000033952
ENSG00000179862
Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4
Tissue enhanced
Detected in many
male glands:
43.1
salivary gland:
72.2
upper respiratory system:
46.4
CKAP2
ENSSSCG00000009378
ENSG00000136108
Cytoskeleton associated protein 2
Tissue enhanced
Detected in many
lymphoid tissue:
32.9
CKAP2L
ENSSSCG00000008089
ENSG00000169607
Cytoskeleton associated protein 2 like
Tissue enhanced
Detected in many
large intestine:
16.8
lymphoid tissue:
16.2
small intestine:
19.1
stomach:
37.0
CKAP4
ENSSSCG00000000171
ENSG00000136026
Cytoskeleton-associated protein 4
Tissue enhanced
Detected in all
cartilage:
61.8
ovary:
56.8
CKB
ENSSSCG00000021220
ENSG00000166165
Creatine kinase B-type
Tissue enhanced
Detected in many
brain:
121.7
pineal gland:
104.9
retina:
70.4
smooth muscle:
65.9
CKM
ENSSSCG00000036132
ENSG00000104879
Creatine kinase M-type
Tissue enriched
Detected in some
skeletal muscle:
470.7
CLCA1
ENSSSCG00000006933
ENSG00000016490
Chloride channel accessory 1
Tissue enhanced
Detected in some
esophagus:
245.3
male glands:
91.9
upper respiratory system:
255.5
CLCF1
ENSSSCG00000012915
ENSG00000175505
Cardiotrophin like cytokine factor 1
Low tissue specificity
Detected in all
CLDN4
ENSSSCG00000007718
ENSG00000189143
Claudin-4
Tissue enhanced
Detected in many
upper respiratory system:
62.5
CLEC14A
ENSSSCG00000023760
ENSG00000176435
C-type lectin domain containing 14A
Low tissue specificity
Detected in many
CLEC17A
ENSSSCG00000013777
ENSG00000187912
C-type lectin domain containing 17A
Tissue enriched
Detected in many
lymphoid tissue:
33.0
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