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Chromosome
1
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8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CD4
ENSSSCG00000000687
ENSG00000010610
CD4 molecule
Tissue enriched
Detected in many
lymphoid tissue:
100.2
CD40
ENSSSCG00000035078
ENSG00000101017
Tumor necrosis factor receptor superfamily member 5
Tissue enhanced
Detected in all
lens:
32.7
lymphoid tissue:
21.3
CD40LG
ENSSSCG00000030172
ENSG00000102245
CD40 ligand
Tissue enhanced
Detected in many
lymphoid tissue:
20.6
small intestine:
6.8
CD52
ENSSSCG00000040957
ENSG00000169442
CAMPATH-1 antigen precursor
Group enriched
Detected in some
ductus deferens:
181.8
epididymis:
47.2
CD68
ENSSSCG00000017956
ENSG00000129226
Macrosialin precursor
Tissue enhanced
Detected in many
lymphoid tissue:
102.3
synovial tissue:
49.3
CD69
ENSSSCG00000000653
ENSG00000110848
Early activation antigen CD69
Tissue enhanced
Detected in some
large intestine:
11.4
lung:
15.8
lymphoid tissue:
28.4
upper respiratory system:
14.3
CD72
ENSSSCG00000005311
ENSG00000137101
B-cell differentiation antigen CD72
Tissue enriched
Detected in many
lymphoid tissue:
34.7
CD74
ENSSSCG00000033262
ENSG00000019582
CD74 antigen
Tissue enhanced
Detected in all
lymphoid tissue:
240.1
CD79B
ENSSSCG00000017283
ENSG00000007312
B-cell antigen receptor complex-associated protein beta chain precursor
Tissue enhanced
Detected in some
lymphoid tissue:
49.6
pituitary gland:
14.0
upper respiratory system:
33.2
CD82
ENSSSCG00000029521
ENSG00000085117
CD82 antigen
Low tissue specificity
Detected in all
CD8A
ENSSSCG00000008217
ENSG00000153563
T-cell surface glycoprotein CD8 alpha chain precursor
Tissue enriched
Detected in many
lymphoid tissue:
80.2
CD8B
ENSSSCG00000008213
ENSG00000172116,ENSG00000254126
T-cell surface glycoprotein CD8 beta chain precursor
Tissue enriched
Detected in all
lymphoid tissue:
104.7
CD9
ENSSSCG00000022230
ENSG00000010278
CD9 antigen
Low tissue specificity
Detected in all
CD96
ENSSSCG00000023993
ENSG00000153283
T-cell surface protein tactile
Tissue enhanced
Detected in many
large intestine:
22.3
lymphoid tissue:
27.2
CDC20
ENSSSCG00000003949
ENSG00000117399
Cell division cycle protein 20 homolog
Tissue enhanced
Detected in many
testis:
33.1
CDC42BPA
ENSSSCG00000010862
ENSG00000143776
CDC42 binding protein kinase alpha
Low tissue specificity
Detected in all
CDC42BPB
ENSSSCG00000002523
ENSG00000198752
CDC42 binding protein kinase beta
Low tissue specificity
Detected in all
CDC42BPG
ENSSSCG00000013018
ENSG00000171219
CDC42 binding protein kinase gamma
Low tissue specificity
Detected in many
CDC42EP1
ENSSSCG00000026108
ENSG00000128283
CDC42 effector protein 1
Low tissue specificity
Detected in many
CDC42EP2
ENSSSCG00000012996
ENSG00000149798
CDC42 effector protein 2
Tissue enhanced
Detected in many
mesothelial tissue:
68.1
CDC42EP3
ENSSSCG00000021359
ENSG00000163171
CDC42 effector protein 3
Low tissue specificity
Detected in all
CDC42EP5
ENSSSCG00000039922
ENSG00000167617
CDC42 effector protein 5
Tissue enhanced
Detected in many
male glands:
165.6
CDC6
ENSSSCG00000017471
ENSG00000094804
Cell division cycle 6
Tissue enhanced
Detected in all
lymphoid tissue:
19.7
CDCA2
ENSSSCG00000009653
ENSG00000184661
Cell division cycle associated 2
Group enriched
Detected in many
lymphoid tissue:
14.7
testis:
44.3
CDCA5
ENSSSCG00000013008
ENSG00000146670
Cell division cycle associated 5
Low tissue specificity
Detected in all
CDCA7
ENSSSCG00000015961
ENSG00000144354
Cell division cycle associated 7
Tissue enhanced
Detected in all
lymphoid tissue:
34.3
CDCA7L
ENSSSCG00000015380
ENSG00000164649
Cell division cycle associated 7 like
Tissue enhanced
Detected in many
lymphoid tissue:
46.9
CDCA8
ENSSSCG00000032909
ENSG00000134690
Cell division cycle associated 8
Tissue enhanced
Detected in many
lymphoid tissue:
20.0
testis:
11.2
upper respiratory system:
12.6
CDH1
ENSSSCG00000025652
ENSG00000039068
Cadherin-1 precursor
Tissue enhanced
Detected in many
male glands:
78.6
CDH11
ENSSSCG00000002795
ENSG00000140937
Cadherin-11 preproprotein
Tissue enhanced
Detected in many
dura mater:
51.5
CDH13
ENSSSCG00000002684
ENSG00000140945
Cadherin-13 precursor
Tissue enhanced
Detected in many
cartilage:
105.0
heart:
54.6
synovial tissue:
58.9
CDH2
ENSSSCG00000003722
ENSG00000170558
Cadherin 2
Tissue enhanced
Detected in many
heart:
61.5
lens:
70.7
pituitary gland:
36.5
CDH24
ENSSSCG00000002037
ENSG00000139880
Cadherin 24
Tissue enriched
Detected in many
lymphoid tissue:
60.4
CDH3
ENSSSCG00000023162
ENSG00000062038
Cadherin 3
Tissue enhanced
Detected in many
choroid plexus:
29.6
kidney:
32.5
thyroid gland:
48.9
CDH5
ENSSSCG00000035772
ENSG00000179776
Cadherin-5 precursor
Low tissue specificity
Detected in many
CDK14
ENSSSCG00000015307
ENSG00000058091
Cyclin dependent kinase 14
Tissue enhanced
Detected in all
brain:
50.0
CDK2
ENSSSCG00000000373
ENSG00000123374
Cyclin-dependent kinase 2
Tissue enhanced
Detected in many
lymphoid tissue:
27.2
CDK6
ENSSSCG00000040183
ENSG00000105810
Cyclin dependent kinase 6
Tissue enhanced
Detected in all
lymphoid tissue:
52.9
CDKN2C
ENSSSCG00000003876
ENSG00000123080
Cyclin dependent kinase inhibitor 2C
Low tissue specificity
Detected in all
CDKN3
ENSSSCG00000005047
ENSG00000100526
Cyclin-dependent kinase inhibitor 3
Tissue enhanced
Detected in all
testis:
63.9
CDS1
ENSSSCG00000009231
ENSG00000163624
Phosphatidate cytidylyltransferase 1
Low tissue specificity
Detected in many
CDT1
ENSSSCG00000002651
ENSG00000167513
Chromatin licensing and DNA replication factor 1
Tissue enhanced
Detected in many
lymphoid tissue:
20.1
CEACAM16
ENSSSCG00000003081
ENSG00000213892
Carcinoembryonic antigen related cell adhesion molecule 16
Tissue enhanced
Detected in many
kidney:
16.8
CEBPA
ENSSSCG00000002866
ENSG00000245848
CCAAT/enhancer binding protein alpha
Tissue enhanced
Detected in many
adipose tissue:
149.5
bone marrow:
77.5
CEBPB
ENSSSCG00000034207
ENSG00000172216
CCAAT/enhancer-binding protein beta
Low tissue specificity
Detected in many
CEBPD
ENSSSCG00000032367
ENSG00000221869
CCAAT/enhancer binding protein delta
Tissue enhanced
Detected in many
mesothelial tissue:
76.8
CECR2
ENSSSCG00000000766
ENSG00000099954
CECR2, histone acetyl-lysine reader
Low tissue specificity
Detected in all
CELF5
ENSSSCG00000013476
ENSG00000161082
CUGBP Elav-like family member 5
Tissue enhanced
Detected in some
brain:
27.0
fallopian tube:
9.1
CENPA
ENSSSCG00000038543
ENSG00000115163
Centromere protein A
Tissue enhanced
Detected in many
lymphoid tissue:
23.7
CENPE
ENSSSCG00000023296
ENSG00000138778
Centromere protein E
Tissue enhanced
Detected in many
large intestine:
15.5
lymphoid tissue:
29.2
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