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Chromosome
1
2
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8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CLEC1A
ENSSSCG00000000649
ENSG00000150048
C-type lectin domain family 1 member A
Low tissue specificity
Detected in many
CLEC3B
ENSSSCG00000011299
ENSG00000163815
C-type lectin domain family 3 member B
Tissue enhanced
Detected in many
adipose tissue:
80.1
CLEC4F
ENSSSCG00000023258
ENSG00000152672
C-type lectin domain family 4 member F
Group enriched
Detected in some
liver:
24.3
lymphoid tissue:
18.0
retina:
19.2
CLEC4G
ENSSSCG00000039007
ENSG00000182566
C-type lectin domain family 4 member G
Group enriched
Detected in all
liver:
53.4
lymphoid tissue:
26.1
CLGN
ENSSSCG00000026360
ENSG00000153132
Calmegin precursor
Group enriched
Detected in many
choroid plexus:
20.8
male glands:
21.9
testis:
81.2
CLIC5
ENSSSCG00000037416
ENSG00000112782
Chloride intracellular channel 5
Tissue enriched
Detected in many
lens:
235.3
CLNK
ENSSSCG00000022448
ENSG00000109684
Cytokine dependent hematopoietic cell linker
Tissue enhanced
Detected in many
lymphoid tissue:
15.1
salivary gland:
8.3
stomach:
7.5
CLU
ENSSSCG00000009668
ENSG00000120885
Clusterin Clusterin beta chain Clusterin alpha chain
Tissue enhanced
Detected in all
cartilage:
638.2
CLVS1
ENSSSCG00000006230
ENSG00000177182
Clavesin 1
Tissue enhanced
Detected in many
brain:
37.4
pineal gland:
20.6
CMKLR1
ENSSSCG00000031346
ENSG00000174600
Chemokine-like receptor 1
Tissue enhanced
Detected in many
lymphoid tissue:
34.4
synovial tissue:
24.6
CMTM2
ENSSSCG00000031837
ENSG00000140932
CKLF like MARVEL transmembrane domain containing 2
Tissue enriched
Detected in some
testis:
101.3
CMYA5
ENSSSCG00000026098
ENSG00000164309
Cardiomyopathy-associated protein 5
Group enriched
Detected in some
heart:
72.9
skeletal muscle:
198.1
CNFN
ENSSSCG00000027022
ENSG00000105427
Cornifelin
Tissue enriched
Detected in some
mouth:
206.7
CNMD
ENSSSCG00000009442
ENSG00000136110
Chondromodulin
Tissue enhanced
Detected in some
cartilage:
23.0
choroid plexus:
102.2
pineal gland:
28.0
CNN1
ENSSSCG00000013614
ENSG00000130176
Calponin-1
Tissue enhanced
Detected in many
smooth muscle:
549.0
urinary bladder:
230.6
CNN3
ENSSSCG00000006887
ENSG00000117519
Calponin 3
Low tissue specificity
Detected in all
CNNM2
ENSSSCG00000010593
ENSG00000148842
Cyclin and CBS domain divalent metal cation transport mediator 2
Tissue enhanced
Detected in all
choroid plexus:
62.9
CNR2
ENSSSCG00000027849
ENSG00000188822
Cannabinoid receptor 2
Tissue enriched
Detected in some
lymphoid tissue:
39.5
CNRIP1
ENSSSCG00000008349
ENSG00000119865
Cannabinoid receptor interacting protein 1
Tissue enhanced
Detected in many
brain:
52.6
CNTFR
ENSSSCG00000010974
ENSG00000122756
Ciliary neurotrophic factor receptor
Tissue enhanced
Detected in many
urinary bladder:
60.4
CNTN2
ENSSSCG00000040824
ENSG00000184144
Contactin 2
Tissue enriched
Detected in some
brain:
54.9
CNTN4
ENSSSCG00000011527
ENSG00000144619
Contactin 4
Tissue enriched
Detected in many
pineal gland:
89.6
COCH
ENSSSCG00000022679
ENSG00000100473
Cochlin
Tissue enriched
Detected in some
cartilage:
173.1
COL12A1
ENSSSCG00000004484
ENSG00000111799
Collagen type XII alpha 1 chain
Tissue enhanced
Detected in many
cartilage:
157.9
COL13A1
ENSSSCG00000010256
ENSG00000197467
Collagen type XIII alpha 1 chain
Tissue enhanced
Detected in many
cervix:
36.3
COL14A1
ENSSSCG00000005997
ENSG00000187955
Collagen type XIV alpha 1 chain
Low tissue specificity
Detected in all
COL16A1
ENSSSCG00000003603
ENSG00000084636
Collagen type XVI alpha 1 chain
Tissue enriched
Detected in many
cartilage:
140.4
COL17A1
ENSSSCG00000010607
ENSG00000065618
Collagen type XVII alpha 1 chain
Tissue enhanced
Detected in many
cornea:
150.8
skin:
41.1
COL18A1
ENSSSCG00000038089
ENSG00000182871
Collagen type XVIII alpha 1 chain
Tissue enhanced
Detected in many
liver:
94.5
COL1A1
ENSSSCG00000036135
ENSG00000108821
Collagen type I alpha 1 chain
Tissue enhanced
Detected in many
dura mater:
410.3
COL1A2
ENSSSCG00000015326
ENSG00000164692
Collagen alpha-2(I) chain precursor
Tissue enhanced
Detected in many
dura mater:
322.8
COL26A1
ENSSSCG00000007678
ENSG00000160963
Collagen type XXVI alpha 1 chain
Tissue enhanced
Detected in many
adipose tissue:
31.0
lymphoid tissue:
16.8
ovary:
13.3
COL3A1
ENSSSCG00000016034
ENSG00000168542
Collagen alpha-1(III) chain precursor
Tissue enhanced
Detected in many
dura mater:
260.5
mesothelial tissue:
240.6
COL4A2
ENSSSCG00000009545
ENSG00000134871
Collagen type IV alpha 2 chain
Tissue enhanced
Detected in many
adipose tissue:
88.3
lens:
90.1
COL5A1
ENSSSCG00000005751
ENSG00000130635
Collagen alpha-1(V) chain precursor
Tissue enhanced
Detected in many
cartilage:
124.1
COL5A2
ENSSSCG00000016035
ENSG00000204262
Collagen alpha-2(V) chain precursor
Tissue enhanced
Detected in many
ovary:
74.6
COL5A3
ENSSSCG00000013667
ENSG00000080573
Collagen alpha-3(V) chain precursor
Tissue enhanced
Detected in many
adipose tissue:
67.0
aorta:
38.8
bone marrow:
48.9
COL6A2
ENSSSCG00000028022
ENSG00000142173
Collagen type VI alpha 2 chain
Tissue enhanced
Detected in all
cartilage:
281.6
synovial tissue:
155.1
COL6A3
ENSSSCG00000027331
ENSG00000163359
Collagen type VI alpha 3 chain
Tissue enhanced
Detected in many
cornea:
101.7
COL6A6
ENSSSCG00000037430
ENSG00000206384
Collagen type VI alpha 6 chain
Tissue enhanced
Detected in many
adipose tissue:
23.6
heart:
21.3
lymphoid tissue:
18.9
COLCA2
ENSSSCG00000015019
ENSG00000214290
Colorectal cancer associated 2
Tissue enhanced
Detected in many
adrenal gland:
39.6
epididymis:
35.6
liver:
28.3
stomach:
35.9
COLEC12
ENSSSCG00000040397
ENSG00000158270
Collectin subfamily member 12
Tissue enhanced
Detected in many
cartilage:
131.9
synovial tissue:
54.7
COPZ2
ENSSSCG00000017526
ENSG00000005243
Coatomer protein complex subunit zeta 2
Low tissue specificity
Detected in all
CORO1B
ENSSSCG00000012920
ENSG00000172725
Coronin 1B
Low tissue specificity
Detected in all
CORO6
ENSSSCG00000017792
ENSG00000167549
Coronin 6
Tissue enriched
Detected in many
skeletal muscle:
101.5
COTL1
ENSSSCG00000037645
ENSG00000103187
Coactosin like F-actin binding protein 1
Tissue enriched
Detected in many
lens:
185.6
COX4I2
ENSSSCG00000038384
ENSG00000131055
Cytochrome c oxidase subunit 4I2
Tissue enhanced
Detected in many
cartilage:
113.6
COX8H
ENSSSCG00000014560
COX8H protein
Tissue enhanced
Detected in some
heart:
116.6
male glands:
58.9
mouth:
53.1
skeletal muscle:
265.2
CP
ENSSSCG00000011700
ENSG00000047457
Ceruloplasmin precursor
Tissue enriched
Detected in many
liver:
192.8
CPAMD8
ENSSSCG00000013869
ENSG00000160111
C3 and PZP like, alpha-2-macroglobulin domain containing 8
Tissue enhanced
Detected in many
cartilage:
25.2
cervix:
18.1
ductus deferens:
19.3
lymphoid tissue:
19.7
synovial tissue:
19.4
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