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Chromosome
1
2
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7
8
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10
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CC2D2A
ENSSSCG00000008738
ENSG00000048342
Coiled-coil and C2 domain containing 2A
Low tissue specificity
Detected in all
CCDC114
ENSSSCG00000026689
ENSG00000105479
Coiled-coil domain containing 114
Tissue enhanced
Detected in many
choroid plexus:
27.8
fallopian tube:
35.7
lung:
33.0
CCDC181
ENSSSCG00000028804
ENSG00000117477
Coiled-coil domain-containing protein 181
Tissue enhanced
Detected in many
choroid plexus:
27.5
pineal gland:
39.1
pituitary gland:
27.4
retina:
33.1
CCDC3
ENSSSCG00000011110
ENSG00000151468
Coiled-coil domain containing 3
Tissue enhanced
Detected in many
mesothelial tissue:
62.2
upper respiratory system:
64.7
CCDC34
ENSSSCG00000013336
ENSG00000109881
Coiled-coil domain containing 34
Tissue enhanced
Detected in all
testis:
33.7
CCDC80
ENSSSCG00000011928
ENSG00000091986
Coiled-coil domain containing 80
Tissue enhanced
Detected in many
cartilage:
103.3
lens:
84.5
mesothelial tissue:
100.8
CCDC85B
ENSSSCG00000012968
ENSG00000175602
Coiled-coil domain containing 85B
Tissue enhanced
Detected in all
brain:
40.7
lens:
68.3
CCDC88A
ENSSSCG00000008406
ENSG00000115355
Coiled-coil domain containing 88A
Tissue enhanced
Detected in many
brain:
42.8
testis:
42.0
CCDC9B
ENSSSCG00000023975
ENSG00000188549
Coiled-coil domain containing 9B
Low tissue specificity
Detected in all
CCK
ENSSSCG00000011277
ENSG00000187094
Cholecystokinin precursor
Group enriched
Detected in some
brain:
94.4
heart:
73.4
CCL1
ENSSSCG00000017720
ENSG00000108702
C-C motif chemokine 1 precursor
Group enriched
Detected in some
lymphoid tissue:
8.0
ovary:
30.5
CCL14
ENSSSCG00000034722
ENSG00000276409
C-C motif chemokine 14 precursor
Tissue enhanced
Detected in many
adipose tissue:
73.8
synovial tissue:
65.8
CCL17
ENSSSCG00000023852
ENSG00000102970
C-C motif chemokine 17 precursor
Group enriched
Detected in some
lymphoid tissue:
32.7
ovary:
21.7
CCL19
ENSSSCG00000010966
ENSG00000172724
C-C motif chemokine 19 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
113.4
CCL2
ENSSSCG00000017723
ENSG00000108691
C-C motif chemokine 2
Tissue enhanced
Detected in many
aorta:
52.5
ovary:
88.5
CCL20
ENSSSCG00000016254
ENSG00000115009
C-C motif chemokine 20 precursor
Tissue enhanced
Detected in all
adrenal gland:
29.1
lymphoid tissue:
26.2
CCL21
ENSSSCG00000038162
ENSG00000137077
C-C motif chemokine 21 precursor
Tissue enhanced
Detected in all
lymphoid tissue:
111.9
ovary:
39.7
CCL22
ENSSSCG00000002821
ENSG00000102962
C-C motif chemokine 22 precursor
Group enriched
Detected in some
lymphoid tissue:
35.1
testis:
57.7
CCL26
ENSSSCG00000039874
ENSG00000006606
C-C motif chemokine 26 precursor
Tissue enhanced
Detected in many
cartilage:
27.6
CCL3L1
ENSSSCG00000017700
ENSG00000277632
C-C motif chemokine 3-like 1 precursor
Tissue enhanced
Detected in many
dura mater:
10.8
liver:
15.6
lung:
10.2
CCL5
ENSSSCG00000017705
ENSG00000271503
C-C motif chemokine 5 precursor
Tissue enhanced
Detected in many
large intestine:
83.3
small intestine:
60.4
stomach:
49.5
CCNB2
ENSSSCG00000004588
ENSG00000157456
G2/mitotic-specific cyclin-B2
Tissue enhanced
Detected in many
lymphoid tissue:
14.0
testis:
48.3
CCNB3
ENSSSCG00000012307
ENSG00000147082
Cyclin B3
Low tissue specificity
Detected in all
CCND1
ENSSSCG00000037900
ENSG00000110092
Cyclin D1
Low tissue specificity
Detected in many
CCNE2
ENSSSCG00000006095
ENSG00000175305
G1/S-specific cyclin-E2
Tissue enhanced
Detected in all
lymphoid tissue:
28.4
CCNF
ENSSSCG00000026326
ENSG00000162063
Cyclin F
Tissue enhanced
Detected in many
epididymis:
32.5
lymphoid tissue:
15.4
CCNJL
ENSSSCG00000017036
ENSG00000135083
Cyclin J like
Tissue enhanced
Detected in many
fallopian tube:
14.6
lymphoid tissue:
18.6
CCP110
ENSSSCG00000023829
ENSG00000103540
Centriolar coiled-coil protein 110
Tissue enhanced
Detected in all
brain:
59.4
CCR1
ENSSSCG00000011322
ENSG00000163823
C-C chemokine receptor type 1
Tissue enhanced
Detected in all
lymphoid tissue:
31.0
CCR2
ENSSSCG00000024311
ENSG00000121807
C-C chemokine receptor type 2
Tissue enhanced
Detected in many
ovary:
15.6
CCR4
ENSSSCG00000034660
ENSG00000183813
C-C motif chemokine receptor 4
Tissue enhanced
Detected in many
lymphoid tissue:
16.6
testis:
17.2
CCR5
ENSSSCG00000024344
ENSG00000160791
C-C chemokine receptor type 5
Low tissue specificity
Detected in many
CCR6
ENSSSCG00000024562
ENSG00000112486
C-C motif chemokine receptor 6
Tissue enhanced
Detected in some
lymphoid tissue:
33.3
stomach:
12.3
upper respiratory system:
8.9
CCR7
ENSSSCG00000017466
ENSG00000126353
C-C motif chemokine receptor 7
Tissue enriched
Detected in many
lymphoid tissue:
42.2
CCR9
ENSSSCG00000011316
ENSG00000173585
C-C chemokine receptor type 9
Tissue enriched
Detected in some
lymphoid tissue:
54.4
CCSER1
ENSSSCG00000022986
ENSG00000184305
Coiled-coil serine rich protein 1
Tissue enhanced
Detected in many
choroid plexus:
77.7
CD163
ENSSSCG00000033146
ENSG00000177575
Scavenger receptor cysteine-rich type 1 protein M130 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
37.2
synovial tissue:
62.7
CD180
ENSSSCG00000016957
ENSG00000134061
CD180 antigen precursor
Tissue enhanced
Detected in many
lymphoid tissue:
28.3
CD19
ENSSSCG00000007807
ENSG00000177455
B-lymphocyte antigen CD19 precursor
Tissue enhanced
Detected in all
lymphoid tissue:
46.0
CD1D
ENSSSCG00000006452
ENSG00000158473
CD1B antigen precursor
Tissue enriched
Detected in all
lymphoid tissue:
107.9
CD1E
ENSSSCG00000006450
ENSG00000158488
T-cell surface glycoprotein CD1e, membrane-associated precursor
Tissue enriched
Detected in some
lymphoid tissue:
73.8
CD200R1
ENSSSCG00000011925
ENSG00000163606
Cell surface glycoprotein CD200 receptor 2 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
39.1
testis:
12.5
CD209
ENSSSCG00000013579
CD209 antigen
Tissue enhanced
Detected in many
adipose tissue:
44.0
synovial tissue:
90.7
CD22
ENSSSCG00000002893
ENSG00000012124
CD22 molecule
Tissue enhanced
Detected in many
lymphoid tissue:
58.5
stomach:
23.7
upper respiratory system:
23.2
CD244
ENSSSCG00000006374
ENSG00000122223
CD244 molecule
Tissue enriched
Detected in some
lymphoid tissue:
43.3
CD248
ENSSSCG00000029949
ENSG00000174807
CD248 molecule
Tissue enhanced
Detected in many
mesothelial tissue:
60.5
synovial tissue:
66.7
CD27
ENSSSCG00000000705
ENSG00000139193
CD27 antigen precursor
Tissue enriched
Detected in many
lymphoid tissue:
73.8
CD300C
ENSSSCG00000017236
CMRF35-like molecule 6 precursor
Tissue enhanced
Detected in many
synovial tissue:
14.7
CD37
ENSSSCG00000033849
ENSG00000104894
CD37 molecule
Tissue enhanced
Detected in many
lymphoid tissue:
50.5
CD38
ENSSSCG00000008742
ENSG00000004468
ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1
Tissue enhanced
Detected in many
brain:
35.6
lymphoid tissue:
15.5
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