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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
C1R
ENSSSCG00000000675
ENSG00000159403
Complement C1r
Tissue enhanced
Detected in many
liver:
178.7
C1S
ENSSSCG00000039847
ENSG00000182326
Complement C1s subcomponent precursor
Tissue enhanced
Detected in all
liver:
141.3
C2
ENSSSCG00000001422
ENSG00000166278
Complement C2 precursor
Tissue enhanced
Detected in many
liver:
61.2
pineal gland:
31.1
synovial tissue:
38.1
C20orf194
ENSSSCG00000007155
ENSG00000088854
Chromosome 20 open reading frame 194
Low tissue specificity
Detected in all
C2CD4D
ENSSSCG00000021540
ENSG00000225556
C2 calcium dependent domain containing 4D
Tissue enhanced
Detected in many
cartilage:
23.9
lymphoid tissue:
34.3
male glands:
20.4
C2orf40
ENSSSCG00000037106
ENSG00000119147
Augurin precursor
Group enriched
Detected in many
cartilage:
221.4
choroid plexus:
64.2
C3
ENSSSCG00000013551
ENSG00000125730
Complement C3 precursor
Tissue enhanced
Detected in many
liver:
357.3
small intestine:
96.6
stomach:
99.9
C4A
ENSSSCG00000001427
ENSG00000224389,ENSG00000244731
Complement C4-A precursor
Tissue enhanced
Detected in many
adipose tissue:
79.1
liver:
104.7
C4BPA
ENSSSCG00000015662
Apolipoprotein R precursor
Tissue enhanced
Detected in many
small intestine:
84.1
synovial tissue:
193.7
C5AR2
ENSSSCG00000003113
ENSG00000134830
Complement component 5a receptor 2
Tissue enhanced
Detected in many
cartilage:
39.6
penis:
16.1
C6orf132
ENSSSCG00000036801
ENSG00000188112
Chromosome 6 open reading frame 132
Tissue enhanced
Detected in many
cornea:
85.0
mouth:
39.1
stomach:
38.1
C7
ENSSSCG00000016859
ENSG00000112936
Complement component C7 precursor
Tissue enhanced
Detected in many
gallbladder:
59.4
heart:
46.0
lymphoid tissue:
47.5
small intestine:
47.9
C8orf34
ENSSSCG00000035887
ENSG00000165084
Chromosome 8 open reading frame 34
Tissue enhanced
Detected in all
epididymis:
54.5
C9orf152
ENSSSCG00000005452
ENSG00000188959
Chromosome 9 open reading frame 152
Tissue enhanced
Detected in many
male glands:
28.7
C9orf3
ENSSSCG00000010943
ENSG00000148120
Chromosome 9 open reading frame 3
Low tissue specificity
Detected in all
CA12
ENSSSCG00000004565
ENSG00000074410
Carbonic anhydrase 12
Tissue enhanced
Detected in many
kidney:
102.2
large intestine:
56.6
male glands:
36.5
CA8
ENSSSCG00000006233
ENSG00000178538
Carbonic anhydrase 8
Tissue enhanced
Detected in many
brain:
39.4
male glands:
79.3
CABLES1
ENSSSCG00000003705
ENSG00000134508
Cdk5 and Abl enzyme substrate 1
Low tissue specificity
Detected in many
CABP4
ENSSSCG00000012906
ENSG00000175544
Calcium binding protein 4
Group enriched
Detected in some
lymphoid tissue:
12.7
retina:
43.3
CACHD1
ENSSSCG00000004829
ENSG00000158966
Cache domain containing 1
Low tissue specificity
Detected in many
CACNA1C
ENSSSCG00000027725
ENSG00000151067
Calcium voltage-gated channel subunit alpha1 C
Tissue enhanced
Detected in many
heart:
35.8
smooth muscle:
38.1
CACNA1D
ENSSSCG00000011455
ENSG00000157388
Calcium voltage-gated channel subunit alpha1 D
Tissue enhanced
Detected in many
adrenal gland:
52.2
male glands:
30.6
CACNA1E
ENSSSCG00000015543
ENSG00000198216
Calcium voltage-gated channel subunit alpha1 E
Tissue enhanced
Detected in many
brain:
30.0
CACNA2D1
ENSSSCG00000015402
ENSG00000153956
Voltage-dependent calcium channel subunit alpha-2/delta-1 preproprotein
Tissue enhanced
Detected in many
skeletal muscle:
68.7
CACNA2D2
ENSSSCG00000011412
ENSG00000007402
Calcium voltage-gated channel auxiliary subunit alpha2delta 2
Tissue enhanced
Detected in many
brain:
20.8
urinary bladder:
23.7
CADM3
ENSSSCG00000006415
ENSG00000162706
Cell adhesion molecule 3
Tissue enhanced
Detected in many
brain:
64.4
lens:
28.0
pineal gland:
26.0
vagus nerve:
41.2
CADPS2
ENSSSCG00000016611
ENSG00000081803
Calcium dependent secretion activator 2
Tissue enhanced
Detected in many
brain:
78.6
CALD1
ENSSSCG00000016535
ENSG00000122786
Caldesmon 1
Tissue enhanced
Detected in all
smooth muscle:
183.5
CALHM2
ENSSSCG00000010600
ENSG00000138172
Calcium homeostasis modulator family member 2
Low tissue specificity
Detected in many
CAMK1G
ENSSSCG00000015619
ENSG00000008118
Calcium/calmodulin-dependent protein kinase type 1G
Tissue enhanced
Detected in many
brain:
22.6
cervix:
37.6
endometrium:
22.5
CAMK2N1
ENSSSCG00000024009
ENSG00000162545
Calcium/calmodulin dependent protein kinase II inhibitor 1
Tissue enriched
Detected in many
brain:
117.1
CAMK4
ENSSSCG00000037019
ENSG00000152495
Calcium/calmodulin dependent protein kinase IV
Tissue enhanced
Detected in many
brain:
29.5
lymphoid tissue:
64.3
CAMKK1
ENSSSCG00000017873
ENSG00000004660
Calcium/calmodulin dependent protein kinase kinase 1
Tissue enhanced
Detected in many
lymphoid tissue:
38.2
CAMSAP2
ENSSSCG00000027314
ENSG00000118200
Calmodulin regulated spectrin associated protein family member 2
Low tissue specificity
Detected in all
CAPN2
ENSSSCG00000029411
ENSG00000162909
Calpain-2 catalytic subunit
Low tissue specificity
Detected in all
CAPN3
ENSSSCG00000004728
ENSG00000092529
Calpain 3
Tissue enriched
Detected in many
skeletal muscle:
135.8
CAPN5
ENSSSCG00000014875
ENSG00000149260
Calpain 5
Tissue enhanced
Detected in all
large intestine:
39.9
stomach:
89.9
CARD9
ENSSSCG00000031715
ENSG00000187796
Caspase recruitment domain family member 9
Tissue enhanced
Detected in many
lymphoid tissue:
36.5
CARMIL1
ENSSSCG00000001100
ENSG00000079691
Capping protein regulator and myosin 1 linker 1
Low tissue specificity
Detected in all
CASKIN2
ENSSSCG00000040578
ENSG00000177303
CASK interacting protein 2
Tissue enhanced
Detected in all
vagus nerve:
77.2
CASP1
ENSSSCG00000028711
ENSG00000137752
Caspase-1
Tissue enhanced
Detected in many
large intestine:
31.0
small intestine:
29.7
CASQ1
ENSSSCG00000006390
ENSG00000143318
Calsequestrin-1 precursor
Tissue enriched
Detected in some
skeletal muscle:
270.8
CATSPERG
ENSSSCG00000002955
ENSG00000099338
Cation channel sperm associated auxiliary subunit gamma
Tissue enhanced
Detected in all
testis:
62.0
CAVIN1
ENSSSCG00000035446
ENSG00000177469
Caveolae associated protein 1
Low tissue specificity
Detected in many
CAVIN2
ENSSSCG00000026618
ENSG00000168497
Caveolae associated protein 2
Tissue enhanced
Detected in many
smooth muscle:
63.8
CAVIN3
ENSSSCG00000014633
ENSG00000170955
Caveolae associated protein 3
Low tissue specificity
Detected in many
CBLB
ENSSSCG00000022486
ENSG00000114423
Cbl proto-oncogene B
Low tissue specificity
Detected in all
CBR2
ENSSSCG00000031851
Carbonyl reductase
Group enriched
Detected in many
liver:
177.7
lung:
292.2
upper respiratory system:
105.0
CBX2
ENSSSCG00000024261
ENSG00000173894
Chromobox 2
Low tissue specificity
Detected in all
CBX5
ENSSSCG00000039191
ENSG00000094916
Chromobox 5
Low tissue specificity
Detected in all
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