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UMAP gene cluster
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Subclass
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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TRIM47
ENSSSCG00000017199
ENSG00000132481
Tripartite motif containing 47
Tissue enhanced
Detected in many
cartilage:
72.7
synovial tissue:
40.9
TRIM58
ENSSSCG00000040066
ENSG00000162722
Tripartite motif containing 58
Tissue enhanced
Detected in all
lymphoid tissue:
27.9
TRIM65
ENSSSCG00000017195
ENSG00000141569
Tripartite motif containing 65
Low tissue specificity
Detected in all
TRIM71
ENSSSCG00000036996
ENSG00000206557
Tripartite motif containing 71
Tissue enhanced
Detected in some
lymphoid tissue:
17.7
stomach:
4.9
TRIO
ENSSSCG00000016781
ENSG00000038382
Trio Rho guanine nucleotide exchange factor
Low tissue specificity
Detected in all
TRIP10
ENSSSCG00000013554
ENSG00000125733
Thyroid hormone receptor interactor 10
Tissue enhanced
Detected in all
skeletal muscle:
67.4
TROAP
ENSSSCG00000023176
ENSG00000135451
Trophinin associated protein
Tissue enhanced
Detected in many
lymphoid tissue:
19.7
TRPC3
ENSSSCG00000009092
ENSG00000138741
Short transient receptor potential channel 3
Tissue enhanced
Detected in many
brain:
12.6
lymphoid tissue:
10.3
TRPC6
ENSSSCG00000024022
ENSG00000137672
Transient receptor potential cation channel subfamily C member 6
Low tissue specificity
Detected in many
TRPV2
ENSSSCG00000018032
ENSG00000187688
Transient receptor potential cation channel subfamily V member 2
Tissue enhanced
Detected in many
lymphoid tissue:
31.0
stomach:
32.3
TRPV5
ENSSSCG00000016469
ENSG00000127412
Transient receptor potential cation channel subfamily V member 5
Tissue enhanced
Detected in many
lymphoid tissue:
22.1
male glands:
35.6
TSPAN1
ENSSSCG00000003908
ENSG00000117472
Tetraspanin-1
Group enriched
Detected in many
large intestine:
150.0
male glands:
58.1
stomach:
183.8
upper respiratory system:
104.3
TSPAN10
ENSSSCG00000031531
ENSG00000182612
Tetraspanin 10
Tissue enriched
Detected in many
retina:
76.8
TSPAN15
ENSSSCG00000036152
ENSG00000099282
Tetraspanin 15
Tissue enhanced
Detected in many
lens:
89.8
TSPAN2
ENSSSCG00000006748
ENSG00000134198
Tetraspanin 2
Tissue enhanced
Detected in many
cervix:
42.1
smooth muscle:
36.8
TSPAN33
ENSSSCG00000016570
ENSG00000158457
Tetraspanin 33
Tissue enhanced
Detected in many
brain:
60.3
breast:
28.9
male glands:
41.7
TSPAN4
ENSSSCG00000012838
ENSG00000214063
Tetraspanin 4
Low tissue specificity
Detected in all
TSPAN5
ENSSSCG00000029813
ENSG00000168785
Tetraspanin 5
Tissue enhanced
Detected in many
brain:
34.8
TSPO
ENSSSCG00000000033
ENSG00000100300
Translocator protein
Low tissue specificity
Detected in many
TTC28
ENSSSCG00000009968
ENSG00000100154
Tetratricopeptide repeat domain 28
Low tissue specificity
Detected in all
TTC7A
ENSSSCG00000008434
ENSG00000068724
Tetratricopeptide repeat domain 7A
Tissue enhanced
Detected in many
lymphoid tissue:
45.9
stomach:
47.9
TTC9
ENSSSCG00000020701
ENSG00000133985
Tetratricopeptide repeat domain 9
Tissue enhanced
Detected in many
brain:
22.7
choroid plexus:
54.1
TTK
ENSSSCG00000004466
ENSG00000112742
TTK protein kinase
Tissue enhanced
Detected in many
lymphoid tissue:
21.4
testis:
36.1
TTLL7
ENSSSCG00000003760
ENSG00000137941
Tubulin tyrosine ligase like 7
Tissue enhanced
Detected in many
brain:
61.5
smooth muscle:
23.3
TUB
ENSSSCG00000014581
ENSG00000166402
Tubby bipartite transcription factor
Tissue enhanced
Detected in many
stomach:
57.3
TUSC1
ENSSSCG00000005128
ENSG00000198680
Tumor suppressor candidate 1
Low tissue specificity
Detected in all
TWIST1
ENSSSCG00000015370
ENSG00000122691
Twist family bHLH transcription factor 1
Tissue enhanced
Detected in many
adipose tissue:
31.3
dura mater:
47.7
TXNDC5
ENSSSCG00000034131
ENSG00000239264
Thioredoxin domain containing 5
Low tissue specificity
Detected in all
TYMS
ENSSSCG00000040678
ENSG00000176890
Thymidylate synthase
Tissue enhanced
Detected in many
lymphoid tissue:
29.7
upper respiratory system:
23.1
TYROBP
ENSSSCG00000002919
ENSG00000011600
TYRO protein tyrosine kinase-binding protein
Tissue enhanced
Detected in many
lymphoid tissue:
70.7
synovial tissue:
61.1
UACA
ENSSSCG00000004973
ENSG00000137831
Uveal autoantigen with coiled-coil domains and ankyrin repeats
Low tissue specificity
Detected in all
UBA7
ENSSSCG00000011393
ENSG00000182179
Ubiquitin like modifier activating enzyme 7
Low tissue specificity
Detected in many
UBASH3B
ENSSSCG00000015136
ENSG00000154127
Ubiquitin associated and SH3 domain containing B
Tissue enhanced
Detected in all
lymphoid tissue:
59.2
UBE2C
ENSSSCG00000007423
ENSG00000175063
Ubiquitin conjugating enzyme E2 C
Tissue enhanced
Detected in many
large intestine:
25.7
lymphoid tissue:
43.3
upper respiratory system:
30.0
UBE2E2
ENSSSCG00000011209
ENSG00000182247
Ubiquitin conjugating enzyme E2 E2
Tissue enhanced
Detected in all
lens:
53.3
UBE2S
ENSSSCG00000035344
ENSG00000108106
Ubiquitin conjugating enzyme E2 S
Low tissue specificity
Detected in all
UBE2T
ENSSSCG00000010923
ENSG00000077152
Ubiquitin conjugating enzyme E2 T
Low tissue specificity
Detected in many
UCK2
ENSSSCG00000039867
ENSG00000143179
Uridine-cytidine kinase 2
Low tissue specificity
Detected in many
UCP2
ENSSSCG00000014833
ENSG00000175567
Mitochondrial uncoupling protein 2
Tissue enhanced
Detected in many
lens:
49.1
lung:
55.0
lymphoid tissue:
69.1
upper respiratory system:
61.4
UHRF1
ENSSSCG00000013517
ENSG00000276043
Ubiquitin like with PHD and ring finger domains 1
Tissue enriched
Detected in many
lymphoid tissue:
91.7
ULK2
ENSSSCG00000018045
ENSG00000083290
Unc-51 like autophagy activating kinase 2
Low tissue specificity
Detected in all
UMAD1
ENSSSCG00000036169
ENSG00000219545
UBAP1-MVB12-associated (UMA) domain containing 1
Low tissue specificity
Detected in all
UNC13C
ENSSSCG00000004614
ENSG00000137766
Unc-13 homolog C
Tissue enriched
Detected in many
brain:
98.8
UNC13D
ENSSSCG00000017200
ENSG00000092929
Unc-13 homolog D
Tissue enhanced
Detected in many
lymphoid tissue:
37.8
UNC5B
ENSSSCG00000010276
ENSG00000107731
Netrin receptor UNC5B precursor
Tissue enhanced
Detected in many
male glands:
52.4
UNC5C
ENSSSCG00000021874
ENSG00000182168
Unc-5 netrin receptor C
Tissue enhanced
Detected in many
brain:
24.2
cornea:
34.2
UNC93B1
ENSSSCG00000012893
ENSG00000110057
Unc-93 homolog B1, TLR signaling regulator
Low tissue specificity
Detected in all
UNG
ENSSSCG00000009938
ENSG00000076248
Uracil DNA glycosylase
Tissue enhanced
Detected in all
male glands:
52.5
UPP1
ENSSSCG00000030388
ENSG00000183696
Uridine phosphorylase 1
Tissue enhanced
Detected in many
male glands:
66.1
mouth:
19.9
USP35
ENSSSCG00000014892
ENSG00000118369
Ubiquitin specific peptidase 35
Low tissue specificity
Detected in many
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