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Keyword
Chromosome
1
2
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6
7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
UST
ENSSSCG00000028974
ENSG00000111962
Uronyl 2-sulfotransferase
Tissue enhanced
Detected in many
lymphoid tissue:
41.2
VASH1
ENSSSCG00000002389
ENSG00000071246
Vasohibin 1
Tissue enhanced
Detected in all
lymphoid tissue:
28.1
VAT1L
ENSSSCG00000002696
ENSG00000171724
Vesicle amine transport 1 like
Group enriched
Detected in many
adrenal gland:
98.1
brain:
32.7
choroid plexus:
77.6
ovary:
32.6
VAV2
ENSSSCG00000005743
ENSG00000160293
Vav guanine nucleotide exchange factor 2
Low tissue specificity
Detected in many
VAX2
ENSSSCG00000008318
ENSG00000116035
Ventral anterior homeobox 2
Tissue enhanced
Detected in many
retina:
22.0
testis:
15.2
VCAM1
ENSSSCG00000006862
ENSG00000162692
Vascular cell adhesion protein 1 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
98.3
VCL
ENSSSCG00000010313
ENSG00000035403
Vinculin
Tissue enhanced
Detected in all
smooth muscle:
130.6
VDR
ENSSSCG00000020864
ENSG00000111424
Vitamin D3 receptor
Tissue enhanced
Detected in many
large intestine:
34.3
skin:
35.4
small intestine:
43.2
VEGFC
ENSSSCG00000015770
ENSG00000150630
Vascular endothelial growth factor C
Tissue enhanced
Detected in many
thyroid gland:
33.4
VGLL3
ENSSSCG00000032398
ENSG00000206538
Transcription cofactor vestigial-like protein 3
Tissue enhanced
Detected in many
mesothelial tissue:
30.9
vagus nerve:
39.6
VLDLR
ENSSSCG00000005229
ENSG00000147852
Very low-density lipoprotein receptor precursor
Tissue enhanced
Detected in all
ovary:
56.7
VNN2
ENSSSCG00000004179
ENSG00000112303
Vanin 2
Tissue enhanced
Detected in some
endometrium:
55.5
fallopian tube:
20.1
upper respiratory system:
67.5
VSNL1
ENSSSCG00000008615
ENSG00000163032
Visinin like 1
Group enriched
Detected in some
brain:
96.6
pineal gland:
24.9
VSTM4
ENSSSCG00000010385
ENSG00000165633
V-set and transmembrane domain containing 4
Tissue enhanced
Detected in all
choroid plexus:
44.0
VWA1
ENSSSCG00000003344
ENSG00000179403
Von Willebrand factor A domain containing 1
Tissue enhanced
Detected in many
vagus nerve:
105.0
WASF3
ENSSSCG00000009300
ENSG00000132970
WAS protein family member 3
Low tissue specificity
Detected in all
WDFY3
ENSSSCG00000009230
ENSG00000163625
WD repeat and FYVE domain containing 3
Low tissue specificity
Detected in all
WDHD1
ENSSSCG00000005052
ENSG00000198554
WD repeat and HMG-box DNA binding protein 1
Low tissue specificity
Detected in all
WDR27
ENSSSCG00000004008
ENSG00000184465
WD repeat domain 27
Tissue enhanced
Detected in all
epididymis:
36.0
WDR78
ENSSSCG00000022305
ENSG00000152763
WD repeat domain 78
Tissue enhanced
Detected in some
choroid plexus:
23.4
fallopian tube:
36.0
upper respiratory system:
16.5
WDR86
ENSSSCG00000016437
ENSG00000187260
WD repeat domain 86
Low tissue specificity
Detected in many
WFDC1
ENSSSCG00000023837
ENSG00000103175
WAP four-disulfide core domain protein 1 precursor
Tissue enhanced
Detected in many
penis:
74.2
smooth muscle:
55.4
WFDC2
ENSSSCG00000033003
ENSG00000101443
WAP four-disulfide core domain protein 2
Tissue enhanced
Detected in many
endometrium:
69.1
upper respiratory system:
173.1
WFS1
ENSSSCG00000032452
ENSG00000109501
Wolframin ER transmembrane glycoprotein
Tissue enriched
Detected in all
brain:
93.7
WHRN
ENSSSCG00000005490
ENSG00000095397
Whirlin
Tissue enhanced
Detected in all
lymphoid tissue:
29.4
WIPI1
ENSSSCG00000017260
ENSG00000070540
WD repeat domain phosphoinositide-interacting protein 1
Tissue enhanced
Detected in all
male glands:
52.0
WLS
ENSSSCG00000003795
ENSG00000116729
Wntless Wnt ligand secretion mediator
Tissue enhanced
Detected in many
choroid plexus:
66.6
lens:
73.9
pineal gland:
103.5
WNK2
ENSSSCG00000034154
ENSG00000165238
WNK lysine deficient protein kinase 2
Tissue enhanced
Detected in many
male glands:
78.4
WNK4
ENSSSCG00000017387
ENSG00000126562
WNK lysine deficient protein kinase 4
Tissue enhanced
Detected in many
cartilage:
36.2
kidney:
46.7
penis:
29.3
vagus nerve:
36.8
WNT5A
ENSSSCG00000035859
ENSG00000114251
Wnt family member 5A
Tissue enhanced
Detected in many
cornea:
43.9
urinary bladder:
38.3
WSCD1
ENSSSCG00000017894
ENSG00000179314
WSC domain containing 1
Tissue enhanced
Detected in many
brain:
41.5
pineal gland:
18.9
WT1
ENSSSCG00000013316
ENSG00000184937
Wilms tumor protein homolog
Tissue enhanced
Detected in many
adipose tissue:
47.8
cervix:
40.7
endometrium:
28.8
fallopian tube:
49.7
mesothelial tissue:
35.8
WTIP
ENSSSCG00000039166
ENSG00000142279
WT1 interacting protein
Low tissue specificity
Detected in all
WWC2
ENSSSCG00000021731
ENSG00000151718
WW and C2 domain containing 2
Low tissue specificity
Detected in all
WWC3
ENSSSCG00000012108
ENSG00000047644
WWC family member 3
Low tissue specificity
Detected in all
WWTR1
ENSSSCG00000011704
ENSG00000018408
WW domain containing transcription regulator 1
Low tissue specificity
Detected in all
XBP1
ENSSSCG00000030996
ENSG00000100219
X-box-binding protein 1 isoform XBP1(S)
Tissue enhanced
Detected in all
male glands:
252.4
XCR1
ENSSSCG00000026707
ENSG00000173578
Chemokine XC receptor 1
Tissue enhanced
Detected in many
lymphoid tissue:
25.4
XIRP2
ENSSSCG00000015917
ENSG00000163092
Xin actin binding repeat containing 2
Tissue enriched
Detected in some
skeletal muscle:
162.8
XKRX
ENSSSCG00000012487
ENSG00000182489
XK related, X-linked
Tissue enhanced
Detected in many
lymphoid tissue:
14.1
XPNPEP2
ENSSSCG00000012651
ENSG00000122121
Xaa-Pro aminopeptidase 2
Group enriched
Detected in many
kidney:
67.5
small intestine:
54.0
YBX2
ENSSSCG00000017938
ENSG00000006047
Y-box binding protein 2
Tissue enriched
Detected in some
testis:
270.8
YBX3
ENSSSCG00000000633
ENSG00000060138
Y-box binding protein 3
Tissue enhanced
Detected in all
skeletal muscle:
405.5
YES1
ENSSSCG00000031942
ENSG00000176105
YES proto-oncogene 1, Src family tyrosine kinase
Low tissue specificity
Detected in all
YPEL1
ENSSSCG00000037288
ENSG00000100027
Yippee like 1
Group enriched
Detected in many
brain:
26.2
testis:
103.5
ZBBX
ENSSSCG00000023393
ENSG00000169064
Zinc finger B-box domain containing
Tissue enhanced
Detected in some
fallopian tube:
35.5
testis:
54.0
ZBED3
ENSSSCG00000014095
ENSG00000132846
Zinc finger BED-type containing 3
Low tissue specificity
Detected in all
ZBTB16
ENSSSCG00000030095
ENSG00000109906
Zinc finger and BTB domain containing 16
Tissue enhanced
Detected in many
skeletal muscle:
73.1
ZBTB32
ENSSSCG00000002908
ENSG00000011590
Zinc finger and BTB domain containing 32
Tissue enriched
Detected in some
testis:
49.4
ZBTB38
ENSSSCG00000022073
ENSG00000177311
Zinc finger and BTB domain-containing protein 38
Low tissue specificity
Detected in all
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