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Human disease related genes
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TMTC2
ENSSSCG00000024065
ENSG00000179104
Transmembrane and tetratricopeptide repeat containing 2
Low tissue specificity
Detected in many
TNFAIP2
ENSSSCG00000036612
ENSG00000185215
TNF alpha induced protein 2
Low tissue specificity
Detected in many
TNFAIP3
ENSSSCG00000004154
ENSG00000118503
Tumor necrosis factor alpha-induced protein 3
Tissue enhanced
Detected in many
lymphoid tissue:
57.5
TNFRSF11A
ENSSSCG00000004898
ENSG00000141655
TNF receptor superfamily member 11a
Low tissue specificity
Detected in many
TNFRSF12A
ENSSSCG00000027130
ENSG00000006327
TNF receptor superfamily member 12A
Tissue enhanced
Detected in many
lens:
46.6
ovary:
89.9
TNFRSF13C
ENSSSCG00000039074
ENSG00000159958
TNF receptor superfamily member 13C
Tissue enhanced
Detected in many
lymphoid tissue:
42.7
upper respiratory system:
22.0
TNFRSF1B
ENSSSCG00000022208
ENSG00000028137
Tumor necrosis factor receptor superfamily member 1B precursor
Tissue enhanced
Detected in many
synovial tissue:
60.5
TNFRSF21
ENSSSCG00000001727
ENSG00000146072
TNF receptor superfamily member 21
Tissue enhanced
Detected in many
male glands:
130.1
stomach:
54.8
TNFRSF25
ENSSSCG00000040001
ENSG00000215788
TNF receptor superfamily member 25
Tissue enhanced
Detected in many
lymphoid tissue:
17.8
stomach:
15.8
TNFRSF4
ENSSSCG00000003331
ENSG00000186827
TNF receptor superfamily member 4
Tissue enhanced
Detected in some
lung:
9.0
lymphoid tissue:
32.2
stomach:
12.7
TNFRSF6B
ENSSSCG00000038671
ENSG00000243509
TNF receptor superfamily member 6b
Tissue enhanced
Detected in many
adrenal gland:
45.6
mesothelial tissue:
11.9
TNFRSF8
ENSSSCG00000003437
ENSG00000120949
TNF receptor superfamily member 8
Tissue enhanced
Detected in many
lung:
15.2
ovary:
33.7
TNFRSF9
ENSSSCG00000003386
ENSG00000049249
Tumor necrosis factor receptor superfamily member 9
Tissue enhanced
Detected in all
lymphoid tissue:
35.3
TNFSF12
ENSSSCG00000040188
ENSG00000239697
Tumor necrosis factor ligand superfamily member 12
Low tissue specificity
Detected in all
TNFSF13
ENSSSCG00000036521
ENSG00000161955
Tumor necrosis factor ligand superfamily member 13
Tissue enhanced
Detected in many
choroid plexus:
27.5
upper respiratory system:
35.5
TNFSF13B
ENSSSCG00000009542
ENSG00000102524
Tumor necrosis factor ligand superfamily member 13B
Tissue enhanced
Detected in many
lymphoid tissue:
16.1
small intestine:
37.3
stomach:
17.4
TNFSF8
ENSSSCG00000036457
ENSG00000106952
Tumor necrosis factor ligand superfamily member 8
Tissue enhanced
Detected in many
lymphoid tissue:
14.9
TNIP3
ENSSSCG00000009100
ENSG00000050730
TNFAIP3 interacting protein 3
Tissue enhanced
Detected in many
lymphoid tissue:
13.4
testis:
23.3
upper respiratory system:
23.4
TNKS1BP1
ENSSSCG00000028527
ENSG00000149115
Tankyrase 1 binding protein 1
Low tissue specificity
Detected in all
TNNC2
ENSSSCG00000007424
ENSG00000101470
Troponin C, skeletal muscle
Tissue enriched
Detected in some
skeletal muscle:
688.9
TNNI2
ENSSSCG00000033260
ENSG00000130598
Troponin I, fast skeletal muscle
Tissue enriched
Detected in some
skeletal muscle:
579.8
TNNT3
ENSSSCG00000031903
ENSG00000130595
Troponin T, fast skeletal muscle
Tissue enriched
Detected in some
skeletal muscle:
638.7
TNS2
ENSSSCG00000000263
ENSG00000111077
Tensin 2
Low tissue specificity
Detected in all
TNS4
ENSSSCG00000017470
ENSG00000131746
Tensin 4
Tissue enhanced
Detected in many
cornea:
29.6
mouth:
29.0
skin:
77.8
stomach:
28.0
TOM1L1
ENSSSCG00000017601
ENSG00000141198
Target of myb1 like 1 membrane trafficking protein
Tissue enhanced
Detected in many
male glands:
48.1
TOP1MT
ENSSSCG00000006958
ENSG00000184428
DNA topoisomerase I mitochondrial
Low tissue specificity
Detected in all
TOP2A
ENSSSCG00000017473
ENSG00000131747
DNA topoisomerase 2-alpha
Tissue enhanced
Detected in all
lymphoid tissue:
51.2
testis:
40.2
TOP2B
ENSSSCG00000011213
ENSG00000077097
DNA topoisomerase 2-beta
Low tissue specificity
Detected in all
TOPBP1
ENSSSCG00000021966
ENSG00000163781
DNA topoisomerase II binding protein 1
Low tissue specificity
Detected in all
TOR4A
ENSSSCG00000005845
ENSG00000198113
Torsin family 4 member A
Tissue enhanced
Detected in many
stomach:
22.5
TOX2
ENSSSCG00000022202
ENSG00000124191
TOX high mobility group box family member 2
Group enriched
Detected in many
brain:
14.4
lens:
50.9
lymphoid tissue:
36.0
pituitary gland:
19.8
TP23
ENSSSCG00000040242
Sus scrofa basic proline-rich protein (SL44-1), mRNA.
Tissue enriched
Detected in many
mouth:
49.3
TP63
ENSSSCG00000025592
ENSG00000073282
Tumor protein p63
Tissue enhanced
Detected in many
mouth:
48.3
skin:
103.2
urinary bladder:
41.9
TPCN2
ENSSSCG00000012875
ENSG00000162341
Two pore segment channel 2
Tissue enriched
Detected in all
kidney:
79.8
TPM1
ENSSSCG00000004570
ENSG00000140416
Tropomyosin alpha-1 chain
Tissue enhanced
Detected in all
skeletal muscle:
406.8
smooth muscle:
225.2
TPM4
ENSSSCG00000013849
ENSG00000167460
Tropomyosin alpha-4 chain
Low tissue specificity
Detected in all
TPPP
ENSSSCG00000032698
ENSG00000171368
Tubulin polymerization-promoting protein
Tissue enhanced
Detected in many
brain:
57.4
skin:
41.7
TPRN
ENSSSCG00000036027
ENSG00000176058
Taperin
Tissue enhanced
Detected in all
stomach:
34.0
TPST1
ENSSSCG00000007737
ENSG00000169902
Protein-tyrosine sulfotransferase 1
Low tissue specificity
Detected in all
TPX2
ENSSSCG00000007235
ENSG00000088325
TPX2, microtubule nucleation factor
Tissue enhanced
Detected in all
lymphoid tissue:
45.9
testis:
34.7
TRAF3IP2
ENSSSCG00000004420
ENSG00000056972
TRAF3 interacting protein 2
Low tissue specificity
Detected in many
TRAV26-2
ENSSSCG00000039980
T cell receptor alpha variable 26-2
Tissue enriched
Detected in many
lymphoid tissue:
52.8
TRAV36DV7
ENSSSCG00000027788
T cell receptor alpha variable 36/delta variable 7
Tissue enhanced
Detected in some
kidney:
9.3
lymphoid tissue:
13.1
TRBV19
ENSSSCG00000016479
T cell receptor beta variable 19
Tissue enriched
Detected in some
lymphoid tissue:
62.0
TRDC
ENSSSCG00000022512
T cell receptor delta constant
Tissue enriched
Detected in many
lymphoid tissue:
67.6
TREML2
ENSSSCG00000001616
ENSG00000112195
Triggering receptor expressed on myeloid cells like 2
Tissue enhanced
Detected in some
lymphoid tissue:
23.6
TRIB2
ENSSSCG00000039080
ENSG00000071575
Tribbles pseudokinase 2
Low tissue specificity
Detected in all
TRIL
ENSSSCG00000016689
ENSG00000255690
TLR4 interactor with leucine rich repeats
Low tissue specificity
Detected in many
TRIM29
ENSSSCG00000015126
ENSG00000137699
Tripartite motif containing 29
Tissue enhanced
Detected in many
cornea:
65.8
mouth:
53.2
skin:
53.0
TRIM46
ENSSSCG00000006526
ENSG00000163462
Tripartite motif containing 46
Tissue enhanced
Detected in many
brain:
16.5
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