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Chromosome
1
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8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
BATF
ENSSSCG00000030582
ENSG00000156127
Basic leucine zipper transcriptional factor ATF-like
Tissue enhanced
Detected in many
lymphoid tissue:
30.1
stomach:
18.0
BATF2
ENSSSCG00000023178
ENSG00000168062
Basic leucine zipper ATF-like transcription factor 2
Tissue enhanced
Detected in many
large intestine:
16.1
stomach:
56.1
BCAR1
ENSSSCG00000028878
ENSG00000050820
BCAR1, Cas family scaffolding protein
Tissue enhanced
Detected in all
kidney:
80.1
BCAS4
ENSSSCG00000007472
ENSG00000124243
Breast carcinoma-amplified sequence 4
Tissue enhanced
Detected in many
lens:
38.4
pineal gland:
27.0
BCKDHB
ENSSSCG00000004465
ENSG00000083123
2-oxoisovalerate dehydrogenase subunit beta, mitochondrial
Tissue enhanced
Detected in all
testis:
70.0
BCL11A
ENSSSCG00000008392
ENSG00000119866
B-cell lymphoma/leukemia 11A
Tissue enhanced
Detected in many
brain:
38.0
lymphoid tissue:
26.5
BCL11B
ENSSSCG00000002507
ENSG00000127152
B-cell lymphoma/leukemia 11B
Tissue enriched
Detected in many
lymphoid tissue:
85.3
BCL2L1
ENSSSCG00000035357
ENSG00000171552
Bcl-2-like protein 1
Low tissue specificity
Detected in all
BCL3
ENSSSCG00000027426
ENSG00000069399
B-cell lymphoma 3 protein
Tissue enhanced
Detected in many
mesothelial tissue:
52.6
BCR
ENSSSCG00000010052
ENSG00000186716
BCR, RhoGEF and GTPase activating protein
Low tissue specificity
Detected in all
BEGAIN
ENSSSCG00000036589
ENSG00000183092
Brain enriched guanylate kinase associated
Tissue enriched
Detected in some
brain:
27.2
BEX1
ENSSSCG00000012525
Brain expressed, X-linked 1
Group enriched
Detected in many
brain:
54.7
pineal gland:
101.4
pituitary gland:
65.2
BEX3
ENSSSCG00000012528
ENSG00000166681
Protein BEX3 isoform a
Tissue enhanced
Detected in many
brain:
49.3
lens:
53.2
pineal gland:
49.5
pituitary gland:
57.4
BEX4
ENSSSCG00000022635
ENSG00000102409
Brain expressed X-linked 4
Tissue enhanced
Detected in all
ductus deferens:
44.6
pineal gland:
60.6
pituitary gland:
54.8
BGN
ENSSSCG00000012766
ENSG00000182492
Biglycan
Tissue enhanced
Detected in many
cartilage:
481.4
synovial tissue:
137.3
BHLHA15
ENSSSCG00000038489
ENSG00000180535
Basic helix-loop-helix family member a15
Tissue enhanced
Detected in many
male glands:
59.2
salivary gland:
80.4
upper respiratory system:
37.6
BHLHB9
ENSSSCG00000012520
ENSG00000198908
Basic helix-loop-helix family member b9
Tissue enhanced
Detected in many
brain:
43.7
lens:
21.6
pituitary gland:
44.8
BHLHE22
ENSSSCG00000006222
ENSG00000180828
Basic helix-loop-helix family member e22
Tissue enhanced
Detected in many
brain:
36.6
BHLHE40
ENSSSCG00000036136
ENSG00000134107
Class E basic helix-loop-helix protein 40
Tissue enhanced
Detected in all
cartilage:
156.2
synovial tissue:
70.3
BICC1
ENSSSCG00000010204
ENSG00000122870
BicC family RNA binding protein 1
Tissue enhanced
Detected in all
mesothelial tissue:
46.6
BIRC5
ENSSSCG00000040486
ENSG00000089685
Baculoviral IAP repeat-containing protein 5
Tissue enhanced
Detected in many
lymphoid tissue:
20.5
testis:
43.3
BLNK
ENSSSCG00000010504
ENSG00000095585
B cell linker
Tissue enhanced
Detected in many
lymphoid tissue:
38.4
small intestine:
27.2
BLVRA
ENSSSCG00000016756
ENSG00000106605
Biliverdin reductase A
Low tissue specificity
Detected in all
BLVRB
ENSSSCG00000021067
ENSG00000090013
Biliverdin reductase B
Tissue enhanced
Detected in all
liver:
74.6
lymphoid tissue:
67.8
BMF
ENSSSCG00000035284
ENSG00000104081
Bcl2 modifying factor
Low tissue specificity
Detected in all
BMP1
ENSSSCG00000009620
ENSG00000168487
Bone morphogenetic protein 1
Tissue enhanced
Detected in many
cartilage:
47.6
ovary:
59.8
BMP2
ENSSSCG00000039442
ENSG00000125845
Bone morphogenetic protein 2 precursor
Tissue enriched
Detected in many
cartilage:
70.8
BMP4
ENSSSCG00000005045
ENSG00000125378
Bone morphogenetic protein 4 precursor
Low tissue specificity
Detected in many
BMP6
ENSSSCG00000001027
ENSG00000153162
Bone morphogenetic protein 6 precursor
Tissue enriched
Detected in many
cartilage:
84.5
BMPER
ENSSSCG00000016665
ENSG00000164619
BMP binding endothelial regulator
Tissue enhanced
Detected in many
cartilage:
59.5
BOC
ENSSSCG00000025826
ENSG00000144857
BOC cell adhesion associated, oncogene regulated
Tissue enhanced
Detected in many
cartilage:
46.5
BPIFB2
ENSSSCG00000029714
ENSG00000078898
BPI fold-containing family B member 2 precursor
Tissue enriched
Detected in some
esophagus:
219.7
BST1
ENSSSCG00000028359
ENSG00000109743
Bone marrow stromal cell antigen 1
Low tissue specificity
Detected in many
BTG2
ENSSSCG00000028322
ENSG00000159388
Protein BTG2
Low tissue specificity
Detected in many
BTK
ENSSSCG00000026742
ENSG00000010671
Tyrosine-protein kinase BTK
Tissue enhanced
Detected in many
lymphoid tissue:
33.5
upper respiratory system:
17.9
BUB1B
ENSSSCG00000004782
ENSG00000156970
BUB1 mitotic checkpoint serine/threonine kinase B
Tissue enhanced
Detected in many
lymphoid tissue:
29.6
testis:
17.7
BZW2
ENSSSCG00000023118
ENSG00000136261
Basic leucine zipper and W2 domain-containing protein 2
Tissue enhanced
Detected in all
heart:
53.5
skeletal muscle:
61.8
C11orf74
ENSSSCG00000035489
ENSG00000166352
Chromosome 11 open reading frame 74
Low tissue specificity
Detected in all
C11orf96
ENSSSCG00000039182
ENSG00000187479
Chromosome 11 open reading frame 96
Tissue enhanced
Detected in many
aorta:
137.7
gallbladder:
125.2
C12orf75
ENSSSCG00000031661
ENSG00000235162
Chromosome 12 open reading frame 75
Low tissue specificity
Detected in many
C15orf39
ENSSSCG00000001885
ENSG00000167173
Chromosome 15 open reading frame 39
Low tissue specificity
Detected in many
C15orf48
ENSSSCG00000004670
ENSG00000166920
Chromosome 15 open reading frame 48
Tissue enriched
Detected in many
large intestine:
98.8
C16orf74
ENSSSCG00000002662
ENSG00000154102
Chromosome 16 open reading frame 74
Tissue enhanced
Detected in all
cervix:
91.3
C19orf44
ENSSSCG00000013859
ENSG00000105072
Chromosome 19 open reading frame 44
Low tissue specificity
Detected in all
C1orf116
ENSSSCG00000032446
ENSG00000182795
Chromosome 1 open reading frame 116
Tissue enhanced
Detected in many
kidney:
35.4
mouth:
34.5
C1orf21
ENSSSCG00000015565
ENSG00000116667
Chromosome 1 open reading frame 21
Tissue enhanced
Detected in all
skeletal muscle:
122.4
C1QA
ENSSSCG00000003524
ENSG00000173372
Complement C1q subcomponent subunit A precursor
Tissue enhanced
Detected in all
lymphoid tissue:
142.8
synovial tissue:
77.9
C1QB
ENSSSCG00000033512
ENSG00000173369
Complement C1q subcomponent subunit B precursor
Tissue enhanced
Detected in many
lymphoid tissue:
125.8
synovial tissue:
91.1
C1QC
ENSSSCG00000038706
ENSG00000159189
Complement C1q subcomponent subunit C precursor
Tissue enhanced
Detected in many
lymphoid tissue:
98.3
synovial tissue:
86.3
C1QTNF1
ENSSSCG00000035511
ENSG00000173918
C1q and TNF related 1
Low tissue specificity
Detected in many
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