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Chromosome
1
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8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ST8SIA1
ENSSSCG00000031329
ENSG00000111728
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1
Tissue enhanced
Detected in many
brain:
18.3
lymphoid tissue:
15.9
STAB1
ENSSSCG00000011443
ENSG00000010327
Stabilin 1
Tissue enhanced
Detected in many
synovial tissue:
60.8
STAC
ENSSSCG00000023085
ENSG00000144681
SH3 and cysteine rich domain
Tissue enhanced
Detected in many
ductus deferens:
34.2
STAC2
ENSSSCG00000017508
ENSG00000141750
SH3 and cysteine rich domain 2
Tissue enhanced
Detected in many
breast:
99.5
male glands:
26.4
STAP1
ENSSSCG00000008923
ENSG00000035720
Signal transducing adaptor family member 1
Tissue enhanced
Detected in many
lymphoid tissue:
27.0
STAP2
ENSSSCG00000013506
ENSG00000178078
Signal transducing adaptor family member 2
Tissue enhanced
Detected in many
male glands:
21.4
small intestine:
30.3
STARD13
ENSSSCG00000009348
ENSG00000133121
StAR related lipid transfer domain containing 13
Tissue enhanced
Detected in all
cartilage:
61.3
STARD4
ENSSSCG00000031518
ENSG00000164211
StAR-related lipid transfer protein 4
Tissue enhanced
Detected in many
liver:
30.0
ovary:
25.0
STARD8
ENSSSCG00000012828
ENSG00000130052
StAR related lipid transfer domain containing 8
Tissue enhanced
Detected in many
kidney:
39.0
lymphoid tissue:
32.9
STARD9
ENSSSCG00000022039
ENSG00000159433
StAR related lipid transfer domain containing 9
Tissue enhanced
Detected in all
vagus nerve:
46.1
STAT4
ENSSSCG00000016059
ENSG00000138378
Signal transducer and activator of transcription 4
Tissue enriched
Detected in some
testis:
72.7
STEAP3
ENSSSCG00000029304
ENSG00000115107
STEAP3 metalloreductase
Tissue enhanced
Detected in many
liver:
45.4
STIL
ENSSSCG00000003888
ENSG00000123473
STIL, centriolar assembly protein
Low tissue specificity
Detected in all
STK36
ENSSSCG00000026964
ENSG00000163482
Serine/threonine kinase 36
Tissue enriched
Detected in all
testis:
65.2
STK39
ENSSSCG00000022496
ENSG00000198648
Serine/threonine kinase 39
Tissue enhanced
Detected in many
choroid plexus:
76.5
lens:
59.8
salivary gland:
59.5
STMN1
ENSSSCG00000026257
ENSG00000117632
Stathmin
Tissue enhanced
Detected in all
brain:
111.8
lymphoid tissue:
71.7
STMN2
ENSSSCG00000006160
ENSG00000104435
Stathmin 2
Group enriched
Detected in many
brain:
88.4
pineal gland:
62.2
STPG4
ENSSSCG00000008432
ENSG00000239605
Sperm-tail PG-rich repeat containing 4
Tissue enriched
Detected in many
testis:
91.0
STRA6
ENSSSCG00000001909
ENSG00000137868
Stimulated by retinoic acid 6
Tissue enhanced
Detected in many
kidney:
79.5
lens:
35.1
STRBP
ENSSSCG00000005582
ENSG00000165209
Spermatid perinuclear RNA binding protein
Low tissue specificity
Detected in all
STX11
ENSSSCG00000004125
ENSG00000135604
Syntaxin 11
Tissue enhanced
Detected in many
lung:
17.8
STX7
ENSSSCG00000004190
ENSG00000079950
Syntaxin 7
Low tissue specificity
Detected in all
STXBP1
ENSSSCG00000005617
ENSG00000136854
Syntaxin binding protein 1
Group enriched
Detected in many
brain:
70.7
retina:
66.1
SUCNR1
ENSSSCG00000022105
ENSG00000198829
Succinate receptor 1
Tissue enriched
Detected in many
liver:
28.7
SULF1
ENSSSCG00000006197
ENSG00000137573
Sulfatase 1
Tissue enhanced
Detected in many
choroid plexus:
72.9
ovary:
48.2
SULT1A3
ENSSSCG00000021557
ENSG00000196502,ENSG00000197165,ENSG00000213648,ENSG00000261052
Sulfotransferase 1A3
Tissue enhanced
Detected in many
adipose tissue:
70.7
cervix:
81.1
SUSD2
ENSSSCG00000025393
ENSG00000099994
Sushi domain containing 2
Tissue enhanced
Detected in many
kidney:
42.5
SUSD3
ENSSSCG00000022237
ENSG00000157303
Sushi domain containing 3
Tissue enhanced
Detected in many
lymphoid tissue:
39.3
SVEP1
ENSSSCG00000005455
ENSG00000165124
Sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
Low tissue specificity
Detected in many
SYCE1
ENSSSCG00000010779
ENSG00000171772
Synaptonemal complex central element protein 1
Tissue enriched
Detected in all
testis:
65.4
SYDE2
ENSSSCG00000006947
ENSG00000097096
Synapse defective Rho GTPase homolog 2
Low tissue specificity
Detected in all
SYNGR1
ENSSSCG00000020873
ENSG00000100321
Synaptogyrin-1
Tissue enhanced
Detected in all
brain:
44.1
SYNM
ENSSSCG00000035223
ENSG00000182253
Synemin
Tissue enriched
Detected in many
smooth muscle:
222.0
SYNPO
ENSSSCG00000038453
ENSG00000171992
Synaptopodin
Tissue enhanced
Detected in many
cartilage:
87.7
skeletal muscle:
115.4
SYNPO2
ENSSSCG00000009111
ENSG00000172403
Synaptopodin 2
Tissue enhanced
Detected in many
smooth muscle:
198.1
SYT2
ENSSSCG00000010926
ENSG00000143858
Synaptotagmin 2
Tissue enriched
Detected in some
brain:
29.0
TAC3
ENSSSCG00000000418
ENSG00000166863
Neurokinin-B
Tissue enhanced
Detected in many
brain:
26.5
lymphoid tissue:
25.6
small intestine:
18.8
testis:
26.4
TACC2
ENSSSCG00000028063
ENSG00000138162
Transforming acidic coiled-coil-containing protein 2
Tissue enhanced
Detected in all
lens:
113.9
TACSTD2
ENSSSCG00000003832
ENSG00000184292
Tumor associated calcium signal transducer 2
Tissue enhanced
Detected in many
cornea:
60.8
upper respiratory system:
52.2
urinary bladder:
76.7
TAGLN
ENSSSCG00000015073
ENSG00000149591
Transgelin
Tissue enhanced
Detected in many
smooth muscle:
633.1
TAL1
ENSSSCG00000035847
ENSG00000162367
TAL bHLH transcription factor 1, erythroid differentiation factor
Tissue enhanced
Detected in many
mesothelial tissue:
33.6
TAS2R42
ENSSSCG00000032322
ENSG00000186136
Taste 2 receptor member 42
Tissue enhanced
Detected in many
lymphoid tissue:
24.2
TAS2R9
ENSSSCG00000000631
ENSG00000121381
Taste 2 receptor member 9
Tissue enhanced
Detected in many
lymphoid tissue:
11.7
TBATA
ENSSSCG00000010273
ENSG00000166220
Thymus, brain and testes associated
Group enriched
Detected in some
lymphoid tissue:
73.6
testis:
79.9
TBC1D12
ENSSSCG00000010485
ENSG00000108239
TBC1 domain family member 12
Low tissue specificity
Detected in all
TBC1D16
ENSSSCG00000017159
ENSG00000167291
TBC1 domain family member 16
Low tissue specificity
Detected in many
TBC1D19
ENSSSCG00000008761
ENSG00000109680
TBC1 domain family member 19
Tissue enhanced
Detected in all
lens:
29.6
lymphoid tissue:
27.8
TBC1D2
ENSSSCG00000005376
ENSG00000095383
TBC1 domain family member 2
Low tissue specificity
Detected in all
TBC1D20
ENSSSCG00000036081
ENSG00000125875
TBC1 domain family member 20
Tissue enhanced
Detected in all
lymphoid tissue:
50.1
TBC1D8
ENSSSCG00000008169
ENSG00000204634
TBC1 domain family member 8
Low tissue specificity
Detected in many
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