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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SOD3
ENSSSCG00000028814
ENSG00000109610
Superoxide dismutase 3
Tissue enhanced
Detected in many
cartilage:
162.0
ovary:
83.5
SOGA1
ENSSSCG00000007324
ENSG00000149639
Suppressor of glucose, autophagy associated 1
Tissue enhanced
Detected in all
brain:
46.3
SORBS1
ENSSSCG00000010494
ENSG00000095637
Sorbin and SH3 domain containing 1
Tissue enhanced
Detected in all
smooth muscle:
127.1
SORBS2
ENSSSCG00000036679
ENSG00000154556
Sorbin and SH3 domain containing 2
Tissue enhanced
Detected in many
smooth muscle:
100.7
SORBS3
ENSSSCG00000009626
ENSG00000120896
Sorbin and SH3 domain containing 3
Low tissue specificity
Detected in all
SORL1
ENSSSCG00000015135
ENSG00000137642
Sortilin related receptor 1
Low tissue specificity
Detected in many
SORT1
ENSSSCG00000006831
ENSG00000134243
Sortilin 1
Tissue enhanced
Detected in many
brain:
52.0
epididymis:
50.6
SOWAHD
ENSSSCG00000012618
ENSG00000187808
Sosondowah ankyrin repeat domain family member D
Tissue enhanced
Detected in many
male glands:
9.8
stomach:
14.9
SOX18
ENSSSCG00000037865
ENSG00000203883
SRY-box 18
Tissue enhanced
Detected in many
adipose tissue:
49.2
SOX4
ENSSSCG00000001081
ENSG00000124766
SRY-box 4
Tissue enhanced
Detected in many
cartilage:
67.4
SOX5
ENSSSCG00000000567
ENSG00000134532
SRY-box 5
Tissue enhanced
Detected in many
cartilage:
117.7
SOX6
ENSSSCG00000034191
ENSG00000110693
SRY-box 6
Tissue enhanced
Detected in many
cartilage:
71.4
SOX8
ENSSSCG00000037970
ENSG00000005513
SRY-box 8
Tissue enhanced
Detected in many
brain:
46.0
cartilage:
42.6
vagus nerve:
45.0
SOX9
ENSSSCG00000017251
ENSG00000125398
SRY-box 9
Tissue enriched
Detected in many
cartilage:
161.2
SPACA6
ENSSSCG00000003238
ENSG00000182310
Sperm acrosome associated 6
Low tissue specificity
Detected in all
SPAG1
ENSSSCG00000027587
ENSG00000104450
Sperm associated antigen 1
Tissue enhanced
Detected in all
choroid plexus:
34.9
testis:
48.1
SPAG5
ENSSSCG00000017758
ENSG00000076382
Sperm-associated antigen 5
Tissue enriched
Detected in some
testis:
36.9
SPARC
ENSSSCG00000017082
ENSG00000113140
SPARC precursor
Tissue enhanced
Detected in all
cartilage:
551.7
SPATA3
ENSSSCG00000016269
ENSG00000173699
Spermatogenesis-associated protein 3
Tissue enriched
Detected in some
testis:
231.7
SPC24
ENSSSCG00000033444
ENSG00000161888
SPC24, NDC80 kinetochore complex component
Tissue enhanced
Detected in many
dura mater:
16.8
lymphoid tissue:
17.2
testis:
17.4
SPDL1
ENSSSCG00000025965
ENSG00000040275
Spindle apparatus coiled-coil protein 1
Tissue enhanced
Detected in many
testis:
15.5
SPHK1
ENSSSCG00000017178
ENSG00000176170
Sphingosine kinase 1
Tissue enhanced
Detected in many
epididymis:
41.9
lens:
21.1
SPI1
ENSSSCG00000013237
ENSG00000066336
Transcription factor PU.1
Tissue enhanced
Detected in many
lung:
52.3
SPIN1
ENSSSCG00000035901
ENSG00000106723
Spindlin-1
Low tissue specificity
Detected in all
SPINK7
ENSSSCG00000022035
ENSG00000145879
Serine peptidase inhibitor, Kazal type 7 (putative)
Tissue enhanced
Detected in many
male glands:
22.2
testis:
40.7
SPINK9
ENSSSCG00000014426
ENSG00000204909
Serine peptidase inhibitor, Kazal type 9
Tissue enhanced
Detected in many
male glands:
28.6
SPINT1
ENSSSCG00000004759
ENSG00000166145
Kunitz-type protease inhibitor 1 precursor
Tissue enhanced
Detected in many
male glands:
48.9
SPIRE1
ENSSSCG00000039769
ENSG00000134278
Spire type actin nucleation factor 1
Low tissue specificity
Detected in all
SPNS2
ENSSSCG00000017879
ENSG00000183018
Sphingolipid transporter 2
Low tissue specificity
Detected in many
SPNS3
ENSSSCG00000017880
ENSG00000182557
Sphingolipid transporter 3 (putative)
Tissue enhanced
Detected in many
lymphoid tissue:
16.8
stomach:
9.3
SPOCK1
ENSSSCG00000032423
ENSG00000152377
SPARC/osteonectin, cwcv and kazal like domains proteoglycan 1
Group enriched
Detected in many
brain:
71.0
pineal gland:
53.0
SPP1
ENSSSCG00000009216
ENSG00000118785
Osteopontin
Tissue enhanced
Detected in many
gallbladder:
209.5
SPRED1
ENSSSCG00000039393
ENSG00000166068
Sprouty related EVH1 domain containing 1
Low tissue specificity
Detected in all
SPRED2
ENSSSCG00000008357
ENSG00000198369
Sprouty related EVH1 domain containing 2
Low tissue specificity
Detected in all
SPRP
ENSSSCG00000022269
ENSG00000163209
Cornifin
Tissue enriched
Detected in some
mouth:
283.8
SPRY2
ENSSSCG00000009482
ENSG00000136158
Sprouty RTK signaling antagonist 2
Low tissue specificity
Detected in all
SPSB1
ENSSSCG00000035940
ENSG00000171621
SplA/ryanodine receptor domain and SOCS box containing 1
Tissue enhanced
Detected in many
cartilage:
51.5
SPTBN2
ENSSSCG00000038508
ENSG00000173898
Spectrin beta, non-erythrocytic 2
Tissue enhanced
Detected in many
brain:
35.5
cornea:
32.4
testis:
42.8
SRC
ENSSSCG00000007334
ENSG00000197122
SRC proto-oncogene, non-receptor tyrosine kinase
Low tissue specificity
Detected in all
SRGAP1
ENSSSCG00000029815
ENSG00000196935
SLIT-ROBO Rho GTPase activating protein 1
Low tissue specificity
Detected in many
SRGAP3
ENSSSCG00000033624
ENSG00000196220
SLIT-ROBO Rho GTPase activating protein 3
Tissue enhanced
Detected in many
brain:
27.3
SSC5D
ENSSSCG00000037450
ENSG00000179954
Scavenger receptor cysteine rich family member with 5 domains
Tissue enhanced
Detected in all
adipose tissue:
52.0
cartilage:
57.7
SSFA2
ENSSSCG00000038730
ENSG00000138434
Sperm specific antigen 2
Low tissue specificity
Detected in all
SSH3
ENSSSCG00000027956
ENSG00000172830
Slingshot protein phosphatase 3
Low tissue specificity
Detected in many
SSPN
ENSSSCG00000025531
ENSG00000123096
Sarcospan
Tissue enhanced
Detected in many
smooth muscle:
47.9
SSX2IP
ENSSSCG00000003757
ENSG00000117155
SSX family member 2 interacting protein
Tissue enhanced
Detected in all
lens:
80.1
ST3GAL4
ENSSSCG00000015232
ENSG00000110080
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 4
Tissue enriched
Detected in many
male glands:
175.5
ST3GAL6
ENSSSCG00000034493
ENSG00000064225
ST3 beta-galactoside alpha-2,3-sialyltransferase 6
Low tissue specificity
Detected in all
ST5
ENSSSCG00000014568
ENSG00000166444
Suppression of tumorigenicity 5
Low tissue specificity
Detected in all
ST6GALNAC3
ENSSSCG00000024494
ENSG00000184005
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
Group enriched
Detected in many
brain:
25.7
cornea:
24.7
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